Difference between revisions of "FISUC RS12045"

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(Created page with "Category:reaction == Reaction RXN-11319 == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19] * direction: ** left-to-right * common-name: ** 2-iminoacet...")
(Created page with "Category:reaction == Reaction RXN-9653 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [http...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-11319 ==
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== Reaction RXN-9653 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.99.19 ec-4.1.99.19]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2-iminoacetate synthase thih
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[NADPH]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CH33ADO]][c] '''+''' 1 [[CPD-108]][c] '''+''' 1 [[CPD-12279]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS00830]]
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* Gene: [[FSU_RS01270]]
−
** Category: [[annotation]]
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** Category: [[manual]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
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* Gene: [[FISUC_RS14640]]
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* Gene: [[FSU_RS01255]]
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** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
* Gene: [[FSU_RS00825]]
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* Gene: [[FSU_RS01605]]
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** Category: [[orthology]]
+
** Category: [[manual]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
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** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''20''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.41|ec-2.3.1.86}}
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** [http://www.genome.jp/dbget-bin/www_bget?R10246 R10246]
 
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26364 26364]
 
−
{{#set: ec-number=ec-4.1.99.19}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-iminoacetate synthase thih}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction source=ecoli|genome}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}

Revision as of 07:15, 24 September 2020

Reaction RXN-9653

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5994, palmitate biosynthesis I (animals and fungi):
    • 20 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12045&oldid=33907"