Difference between revisions of "FSU RS14885"
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(Created page with "Category:reaction == Reaction RXN-13482 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3] * direction: ** reversible * common-name: ** ornithine carbamoy...") |
(Created page with "Category:reaction == Reaction PSERTRANSAMPYR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] * direction: ** reversible * common-name: ** 3-phosp...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction PSERTRANSAMPYR-RXN == |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/2.1. | + | ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
| − | ** | + | ** 3-phosphoserine/phosphohydroxythreonine transaminase |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[FSU_RS04780]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| − | * Gene: [[ | + | ** Category: [[orthology]] |
| + | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[FISUC_RS02890]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: | ||
| + | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
== External links == | == External links == | ||
| − | {{#set: ec-number=ec-2.1. | + | * RHEA: |
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16576 16576] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085] | ||
| + | {{#set: ec-number=ec-2.6.1.52}} | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=3-phosphoserine/phosphohydroxythreonine transaminase}} |
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}} |
Revision as of 07:18, 24 September 2020
Contents
Reaction PSERTRANSAMPYR-RXN
- ec-number:
- direction:
- reversible
- common-name:
- 3-phosphoserine/phosphohydroxythreonine transaminase
Reaction formula
- 1 3OH-4P-OH-ALPHA-KETOBUTYRATE[c] + 1 GLT[c] <=> 1 2-KETOGLUTARATE[c] + 1 4-PHOSPHONOOXY-THREONINE[c]
Gene(s) associated with this reaction
- Gene: FSU_RS04780
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: bifidobacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: faecalibacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: FISUC_RS02890
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
- 4 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: faecalibacterium; tool: orthofinder; comment: n.a
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
- category: orthology; source: bifidobacterium; tool: orthofinder; comment: n.a
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
External links
