Difference between revisions of "FSU RS15260"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
(Created page with "Category:reaction == Reaction RXN0-268 == * ec-number: ** [http://enzyme.expasy.org/EC/2.8.3 ec-2.8.3] * direction: ** reversible == Reaction formula == * 1 PROPIONYL-CO...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction LUMAZINESYN-RXN ==
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== Reaction RXN0-268 ==
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
+
** [http://enzyme.expasy.org/EC/2.8.3 ec-2.8.3]
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
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* common-name:
 
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** 6,7-dimethyl-8-ribityllumazine synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
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* 1 [[PROPIONYL-COA]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[PROPIONATE]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS15715]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS13750]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS15725]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi):
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* [[P108-PWY]], pyruvate fermentation to propanoate I:
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6167]], flavin biosynthesis II (archaea):
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* [[PWY0-43]], conversion of succinate to propanoate:
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** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
 
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28013 28013]
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{{#set: ec-number=ec-2.5.1.78}}
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{{#set: ec-number=ec-2.8.3}}
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{{#set: direction=left-to-right}}
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{{#set: direction=reversible}}
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{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
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{{#set: nb gene associated=0}}
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{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: reconstruction tool=curation}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=added for gap-filling}}
−
{{#set: reconstruction source=ecoli|genome|bthetaiotaomicron}}
+
{{#set: reconstruction source=reactions_add_gp}}

Revision as of 07:18, 24 September 2020

Reaction RXN0-268

  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 8 reactions found over 10 reactions in the full pathway
  • P108-PWY, pyruvate fermentation to propanoate I:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-43, conversion of succinate to propanoate:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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