Difference between revisions of "FISUC RS07845"

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(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1] * direction: ** left-to-right == Reaction formula...")
 
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direction: ** left-to-right == Reaction formula ==...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETATE--COA-LIGASE-RXN ==
+
== Reaction OXALODECARB-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01410]]
+
* Gene: [[FSU_RS09880]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS15220]]
+
* Gene: [[FSU_RS09935]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7118]], chitin degradation to ethanol:
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY0-1313]], acetate conversion to acetyl-CoA:
+
* [[PWY-6339]], syringate degradation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY66-21]], ethanol degradation II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-162]], ethanol degradation IV:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-161]], ethanol degradation III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6672]], cis-genanyl-CoA degradation:
 
 
** '''1''' reactions found over '''9''' reactions in the full pathway
 
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27095 P27095]
+
** [http://www.uniprot.org/uniprot/P13187 P13187]
−
** [http://www.uniprot.org/uniprot/P31638 P31638]
+
** [http://www.uniprot.org/uniprot/P13155 P13155]
−
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
+
** [http://www.uniprot.org/uniprot/P13156 P13156]
−
** [http://www.uniprot.org/uniprot/P28812 P28812]
+
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
−
** [http://www.uniprot.org/uniprot/P27550 P27550]
+
{{#set: ec-number=ec-4.1.1.112}}
−
** [http://www.uniprot.org/uniprot/O34613 O34613]
 
−
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
 
−
** [http://www.uniprot.org/uniprot/P36333 P36333]
 
−
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
 
−
** [http://www.uniprot.org/uniprot/P39062 P39062]
 
−
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
 
−
** [http://www.uniprot.org/uniprot/P52910 P52910]
 
−
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
 
−
** [http://www.uniprot.org/uniprot/P16928 P16928]
 
−
** [http://www.uniprot.org/uniprot/P16929 P16929]
 
−
** [http://www.uniprot.org/uniprot/O68040 O68040]
 
−
** [http://www.uniprot.org/uniprot/P78773 P78773]
 
−
</div>
 
−
{{#set: ec-number=ec-6.2.1.1}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli}}
+
{{#set: reconstruction source=bthetaiotaomicron|ecoli|faecalibacterium}}

Revision as of 07:18, 24 September 2020

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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