Difference between revisions of "FSU RS07260"

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(Created page with "Category:reaction == Reaction ExchangeSeed-NAD == * direction: ** reversible == Reaction formula == * 1.0 NAD[C-BOUNDARY] '''<=>''' 1.0 NAD[e] == Gene(s) associate...")
(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * common-name: ** cis-aconitate hydratase ** aconitate hydratase * direction: ** reversible == Reaction formula == * 1 [...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-NAD ==
+
== Reaction ACONITATEHYDR-RXN ==
 +
* common-name:
 +
** cis-aconitate hydratase
 +
** aconitate hydratase
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[NAD]][C-BOUNDARY] '''<=>''' 1.0 [[NAD]][e]
+
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FISUC_RS00920]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS02800]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
 +
{{#set: common-name=aconitate hydratase|cis-aconitate hydratase}}
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=15}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=genome}}

Revision as of 07:57, 5 October 2020

Reaction ACONITATEHYDR-RXN

  • common-name:
    • cis-aconitate hydratase
    • aconitate hydratase
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 8 reactions found over 12 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 9 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 14 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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