Difference between revisions of "FISUC RS12100"

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(Created page with "Category:reaction == Reaction PYRUVFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54] * direction: ** reversible * common-name: ** formate c-...")
 
(Created page with "Category:reaction == Reaction RXN-16631 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59] * direction: ** left-to-right * common-name: ** 3-hydroxyacyl...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVFORMLY-RXN ==
+
== Reaction RXN-16631 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
+
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** formate c-acetyltransferase
+
** 3-hydroxyacyl-acp dehydratase fabz
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[3R-11Z-3-hydroxy-icos-11-enoyl-ACPs]][c] '''=>''' 1 [[2E-11Z-icosa-2-11-dienoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS05215]]
+
* Gene: [[FSU_RS00310]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS07120]]
+
* Gene: [[FISUC_RS14115]]
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS07105]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
+
* [[PWY-7663]], gondoate biosynthesis (anaerobic):
−
** '''9''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''14''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-5485]], pyruvate fermentation to acetate IV:
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5480]], pyruvate fermentation to ethanol I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5493]], reductive monocarboxylic acid cycle:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-4.2.1.59}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
+
{{#set: nb gene associated=2}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P32674 P32674]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/O26446 O26446]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P75793 P75793]
 
−
** [http://www.uniprot.org/uniprot/P42632 P42632]
 
−
** [http://www.uniprot.org/uniprot/O28823 O28823]
 
−
** [http://www.uniprot.org/uniprot/O32797 O32797]
 
−
** [http://www.uniprot.org/uniprot/Q46266 Q46266]
 
−
** [http://www.uniprot.org/uniprot/P09373 P09373]
 
−
** [http://www.uniprot.org/uniprot/P37836 P37836]
 
−
{{#set: ec-number=ec-2.3.1.54}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=formate c-acetyltransferase}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=plantarum|ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}
+
{{#set: reconstruction source=genome}}

Revision as of 07:57, 5 October 2020

Reaction RXN-16631

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyacyl-acp dehydratase fabz

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7663, gondoate biosynthesis (anaerobic):
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12100&oldid=40082"