Difference between revisions of "FSU RS05440"

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(Created page with "Category:reaction == Reaction UROGENIIISYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75] * direction: ** left-to-right == Reaction formula == *...")
(Created page with "Category:reaction == Reaction 3.4.17.8-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.17.8 ec-3.4.17.8] ** [http://enzyme.expasy.org/EC/3.4.16.4 ec-3.4.16.4] * di...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UROGENIIISYN-RXN ==
+
== Reaction 3.4.17.8-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75]
+
** [http://enzyme.expasy.org/EC/3.4.17.8 ec-3.4.17.8]
 +
** [http://enzyme.expasy.org/EC/3.4.16.4 ec-3.4.16.4]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase
 +
** penicillin-binding protein 2
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[C1]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[D-ALANINE]][c] '''+''' 1 [[UDP-MURNAC-TETRAPEPTIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS10050]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS11430]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS08120]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS09490]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08850 R08850]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10746 P10746]
+
** [http://www.uniprot.org/uniprot/P00733 P00733]
−
** [http://www.uniprot.org/uniprot/P51163 P51163]
+
{{#set: ec-number=ec-3.4.16.4|ec-3.4.17.8}}
−
** [http://www.uniprot.org/uniprot/P21248 P21248]
 
−
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
 
−
** [http://www.uniprot.org/uniprot/P09126 P09126]
 
−
** [http://www.uniprot.org/uniprot/Q59294 Q59294]
 
−
{{#set: ec-number=ec-4.2.1.75}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=penicillin-binding protein 2|d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=reactions_add_gp}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=genome}}

Revision as of 07:09, 9 October 2020

Reaction 3.4.17.8-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase
    • penicillin-binding protein 2

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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