Difference between revisions of "FISUC RS03645"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction GLU6PDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.49 ec-1.1.1.49] * direction: ** left-to-right == Reaction formula ==...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPSYN-RXN ==
+
== Reaction GLU6PDEHYDROG-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
+
** [http://enzyme.expasy.org/EC/1.1.1.49 ec-1.1.1.49]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[FISUC_RS00910]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS02795]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS00915]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS02790]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''17''' reactions found over '''18''' reactions in the full pathway
 +
* [[RUMP-PWY]], formaldehyde oxidation I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-8004]], Entner-Doudoroff pathway I:
 +
** '''8''' reactions found over '''7''' reactions in the full pathway
 +
* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and the Entner-Doudoroff pathway:
 +
** '''4''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_26082020]]; tool: [[curation]]; comment: added to improve flux in sugars
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15842 15842]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02736 R02736]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** [http://www.uniprot.org/uniprot/P11411 P11411]
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
** [http://www.uniprot.org/uniprot/P12646 P12646]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** [http://www.uniprot.org/uniprot/Q00612 Q00612]
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
** [http://www.uniprot.org/uniprot/P54996 P54996]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** [http://www.uniprot.org/uniprot/P21907 P21907]
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
** [http://www.uniprot.org/uniprot/P54547 P54547]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** [http://www.uniprot.org/uniprot/O51581 O51581]
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
** [http://www.uniprot.org/uniprot/P0AC53 P0AC53]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
+
** [http://www.uniprot.org/uniprot/P11413 P11413]
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
** [http://www.uniprot.org/uniprot/P29686 P29686]
−
** [http://www.uniprot.org/uniprot/P12290 P12290]
+
** [http://www.uniprot.org/uniprot/P44311 P44311]
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
** [http://www.uniprot.org/uniprot/P56110 P56110]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
+
** [http://www.uniprot.org/uniprot/Q9JTW0 Q9JTW0]
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
** [http://www.uniprot.org/uniprot/O25730 O25730]
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
+
** [http://www.uniprot.org/uniprot/O51240 O51240]
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
+
** [http://www.uniprot.org/uniprot/O66787 O66787]
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
+
** [http://www.uniprot.org/uniprot/P05370 P05370]
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
** [http://www.uniprot.org/uniprot/P11410 P11410]
−
** [http://www.uniprot.org/uniprot/P07601 P07601]
+
** [http://www.uniprot.org/uniprot/P11412 P11412]
−
** [http://www.uniprot.org/uniprot/P06561 P06561]
+
** [http://www.uniprot.org/uniprot/Q9R5T2 Q9R5T2]
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
+
** [http://www.uniprot.org/uniprot/P48828 P48828]
−
** [http://www.uniprot.org/uniprot/P06562 P06562]
+
** [http://www.uniprot.org/uniprot/P37986 P37986]
−
** [http://www.uniprot.org/uniprot/O27696 O27696]
+
** [http://www.uniprot.org/uniprot/Q8IKU0 Q8IKU0]
−
** [http://www.uniprot.org/uniprot/O28672 O28672]
+
** [http://www.uniprot.org/uniprot/Q27741 Q27741]
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
+
** [http://www.uniprot.org/uniprot/P48826 P48826]
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
+
** [http://www.uniprot.org/uniprot/Q42919 Q42919]
−
** [http://www.uniprot.org/uniprot/P43760 P43760]
+
** [http://www.uniprot.org/uniprot/P37830 P37830]
−
** [http://www.uniprot.org/uniprot/P34817 P34817]
+
** [http://www.uniprot.org/uniprot/Q9FY99 Q9FY99]
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
+
** [http://www.uniprot.org/uniprot/Q49700 Q49700]
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
+
** [http://www.uniprot.org/uniprot/P73411 P73411]
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
+
** [http://www.uniprot.org/uniprot/Q8L743 Q8L743]
−
** [http://www.uniprot.org/uniprot/P19868 P19868]
+
** [http://www.uniprot.org/uniprot/Q43793 Q43793]
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
+
** [http://www.uniprot.org/uniprot/O65856 O65856]
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
+
** [http://www.uniprot.org/uniprot/Q43839 Q43839]
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
+
** [http://www.uniprot.org/uniprot/O81978 O81978]
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
+
** [http://www.uniprot.org/uniprot/O24357 O24357]
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
+
** [http://www.uniprot.org/uniprot/O24358 O24358]
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
+
** [http://www.uniprot.org/uniprot/O24359 O24359]
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
+
** [http://www.uniprot.org/uniprot/O22404 O22404]
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
+
** [http://www.uniprot.org/uniprot/O22405 O22405]
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
+
** [http://www.uniprot.org/uniprot/O22406 O22406]
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
+
** [http://www.uniprot.org/uniprot/Q9FJI5 Q9FJI5]
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
+
** [http://www.uniprot.org/uniprot/Q9LK23 Q9LK23]
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
 
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: ec-number=ec-1.1.1.49}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added to improve flux in sugars}}
−
{{#set: reconstruction source=bifidobacterium|ecoli|genome|bthetaiotaomicron|plantarum}}
+
{{#set: reconstruction source=reactions_add_ibrahim_26082020}}

Revision as of 07:12, 9 October 2020

Reaction GLU6PDEHYDROG-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • OXIDATIVEPENT-PWY, pentose phosphate pathway (oxidative branch) I:
    • 3 reactions found over 3 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 17 reactions found over 18 reactions in the full pathway
  • RUMP-PWY, formaldehyde oxidation I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-8004, Entner-Doudoroff pathway I:
    • 8 reactions found over 7 reactions in the full pathway
  • GLYCOLYSIS-E-D, superpathway of glycolysis and the Entner-Doudoroff pathway:
    • 4 reactions found over 2 reactions in the full pathway
  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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