Difference between revisions of "FSU RS09895"

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(Created page with "Category:reaction == Reaction SPERMIDINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.16 ec-2.5.1.16] * direction: ** reversible == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction FUMHYDR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2] * direction: ** reversible * common-name: ** fumarate hydrata...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SPERMIDINESYN-RXN ==
+
== Reaction FUMHYDR-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 ec-2.5.1.16]
+
** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** fumarate hydratase
 +
* synonymous:
 +
** malate dehydration
 +
** fumarate hydration
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c]
+
* 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS07710]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FISUC_RS13370]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS13380]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01950]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS03830]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS15355]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FSU_RS15345]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation:
 +
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P108-PWY]], pyruvate fermentation to propanoate I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''16''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12724 12724]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12463 12463]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q04718 Q04718]
 +
** [http://www.uniprot.org/uniprot/Q58034 Q58034]
 +
** [http://www.uniprot.org/uniprot/O69294 O69294]
 +
** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
 +
** [http://www.uniprot.org/uniprot/P14407 P14407]
 +
** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
 +
** [http://www.uniprot.org/uniprot/Q58690 Q58690]
 +
** [http://www.uniprot.org/uniprot/O25883 O25883]
 +
** [http://www.uniprot.org/uniprot/O53446 O53446]
 +
** [http://www.uniprot.org/uniprot/O84863 O84863]
 +
** [http://www.uniprot.org/uniprot/Q51404 Q51404]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
 +
** [http://www.uniprot.org/uniprot/P39461 P39461]
 +
** [http://www.uniprot.org/uniprot/Q55674 Q55674]
 +
** [http://www.uniprot.org/uniprot/P93033 P93033]
 +
** [http://www.uniprot.org/uniprot/Q43180 Q43180]
 +
** [http://www.uniprot.org/uniprot/O94552 O94552]
 +
** [http://www.uniprot.org/uniprot/O66271 O66271]
 +
** [http://www.uniprot.org/uniprot/Q60022 Q60022]
 +
** [http://www.uniprot.org/uniprot/P07343 P07343]
 +
** [http://www.uniprot.org/uniprot/P08417 P08417]
 +
** [http://www.uniprot.org/uniprot/P05042 P05042]
 +
** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
 +
** [http://www.uniprot.org/uniprot/P10173 P10173]
 +
** [http://www.uniprot.org/uniprot/P14408 P14408]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
−
* UNIPROT:
+
</div>
−
** [http://www.uniprot.org/uniprot/P19623 P19623]
+
{{#set: ec-number=ec-4.2.1.2}}
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
 
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
 
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
 
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
 
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
 
−
{{#set: ec-number=ec-2.5.1.16}}
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=fumarate hydratase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: synonymous=malate dehydration|fumarate hydration}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb gene associated=6}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: nb pathway associated=16}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|faecalibacterium}}
+
{{#set: reconstruction source=ecoli|bthetaiotaomicron|faecalibacterium|genome}}

Revision as of 17:49, 3 November 2020

Reaction FUMHYDR-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • fumarate hydratase
  • synonymous:
    • malate dehydration
    • fumarate hydration

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-561, superpathway of glyoxylate cycle and fatty acid degradation:
    • 6 reactions found over 4 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle:
    • 7 reactions found over 7 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY, pyruvate fermentation to propanoate I:
    • 4 reactions found over 7 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 16 reactions found over 16 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS09895&oldid=49845"