Difference between revisions of "FISUC RS00285"

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(Created page with "Category:reaction == Reaction RXN-17918 == * direction: ** left-to-right * common-name: ** nad-dependent dna ligase liga == Reaction formula == * 1 5-Phospho-terminated-...")
(Created page with "Category:reaction == Reaction RXN-8770 == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.73 ec-3.1.3.73] * direction: ** left-to-right == Reaction formula == * 1 ADE...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-17918 ==
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== Reaction RXN-8770 ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/3.1.3.73 ec-3.1.3.73]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** nad-dependent dna ligase liga
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c]
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* 1 [[ADENOSYLCOBALAMIN-5-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSYLCOBALAMIN]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS02525]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[FISUC_RS00650]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5509]], adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7975]], adenosylcobalamin biosynthesis from adenosylcobinamide-GDP II:
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
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** '''7''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
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** '''8''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[reactions_add_adenosylcobalamin]]; tool: [[curation]]; comment: added to reach adenosylcobalamin
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R04594 R04594]
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30370 30370]
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{{#set: ec-number=ec-3.1.3.73}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=nad-dependent dna ligase liga}}
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{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=4}}
{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=curation}}
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=added to reach adenosylcobalamin}}
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=reactions_add_adenosylcobalamin}}
{{#set: reconstruction source=genome}}
 

Revision as of 17:54, 3 November 2020

Reaction RXN-8770

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5509, adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7975, adenosylcobalamin biosynthesis from adenosylcobinamide-GDP II:
    • 4 reactions found over 4 reactions in the full pathway
  • COBALSYN-PWY, superpathway of adenosylcobalamin salvage from cobinamide I:
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6269, superpathway of adenosylcobalamin salvage from cobinamide II:
    • 8 reactions found over 6 reactions in the full pathway

Reconstruction information

External links