Difference between revisions of "FSU RS05775"

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(Created page with "Category:reaction == Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52] * direction: ** left-to-right * comm...")
(Created page with "Category:reaction == Reaction 3.1.26.4-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4] * direction: ** left-to-right * common-name: ** ribonuclea...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN ==
+
== Reaction 3.1.26.4-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52]
+
** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** hpch/hpai aldolase/citrate lyase family protein
+
** ribonuclease hii
 +
** ribonuclease h
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-804]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[SUCC-S-ALD]][c]
+
* 1 [[RNA-DNA-hybrids]][c] '''+''' n [[WATER]][c] '''=>''' 1 [[DNA-Holder]][c] '''+''' n [[Nucleoside-Monophosphates]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS13400]]
+
* Gene: [[FSU_RS01150]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS15375]]
+
* Gene: [[FSU_RS15575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS13600]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS14960]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation:
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25789 25789]
+
* UNIPROT:
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P52975 P52975]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
+
** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
+
** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
−
{{#set: ec-number=ec-4.1.2.52}}
+
** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
 +
** [http://www.uniprot.org/uniprot/P43807 P43807]
 +
** [http://www.uniprot.org/uniprot/P43808 P43808]
 +
** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
 +
** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
 +
** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
 +
** [http://www.uniprot.org/uniprot/Q57599 Q57599]
 +
** [http://www.uniprot.org/uniprot/O44114 O44114]
 +
** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
 +
** [http://www.uniprot.org/uniprot/P10442 P10442]
 +
** [http://www.uniprot.org/uniprot/P13319 P13319]
 +
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
 +
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
 +
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
 +
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
 +
** [http://www.uniprot.org/uniprot/O69014 O69014]
 +
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 +
</div>
 +
{{#set: ec-number=ec-3.1.26.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=hpch/hpai aldolase/citrate lyase family protein}}
+
{{#set: common-name=ribonuclease hii|ribonuclease h}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=genome}}
 
{{#set: reconstruction source=genome}}

Revision as of 17:54, 3 November 2020

Reaction 3.1.26.4-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • ribonuclease hii
    • ribonuclease h

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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