Difference between revisions of "FISUC RS12770"

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(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12] * direction: ** left-to-right * common-name:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction KDPGALDOL-RXN ==
+
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
+
** aspartate--trna ligase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS07950]]
+
* Gene: [[FSU_RS00430]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS09880]]
+
* Gene: [[FISUC_RS14240]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7310]], D-glucosaminate degradation:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7242]], D-fructuronate degradation:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
+
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
+
** [http://www.uniprot.org/uniprot/O32038 O32038]
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
+
** [http://www.uniprot.org/uniprot/O67589 O67589]
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
+
** [http://www.uniprot.org/uniprot/P43817 P43817]
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
+
** [http://www.uniprot.org/uniprot/O51402 O51402]
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
+
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
+
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
+
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
+
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 +
** [http://www.uniprot.org/uniprot/O58776 O58776]
 +
** [http://www.uniprot.org/uniprot/O84546 O84546]
 +
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 +
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 +
** [http://www.uniprot.org/uniprot/P47282 P47282]
 +
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 +
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 +
** [http://www.uniprot.org/uniprot/P36429 P36429]
 +
** [http://www.uniprot.org/uniprot/P75068 P75068]
 +
** [http://www.uniprot.org/uniprot/P73851 P73851]
 +
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 +
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 +
** [http://www.uniprot.org/uniprot/P04802 P04802]
 +
** [http://www.uniprot.org/uniprot/P15179 P15179]
 +
** [http://www.uniprot.org/uniprot/P21889 P21889]
 +
** [http://www.uniprot.org/uniprot/P14868 P14868]
 +
** [http://www.uniprot.org/uniprot/P15178 P15178]
 +
** [http://www.uniprot.org/uniprot/O81892 O81892]
 +
** [http://www.uniprot.org/uniprot/O74407 O74407]
 +
** [http://www.uniprot.org/uniprot/O07683 O07683]
 +
</div>
 +
{{#set: ec-number=ec-6.1.1.12}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
+
{{#set: common-name=aspartate--trna ligase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bthetaiotaomicron|ecoli|genome}}
+
{{#set: reconstruction source=genome}}

Revision as of 17:54, 3 November 2020

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • aspartate--trna ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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