Difference between revisions of "FISUC RS03515"

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(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1] * direction: ** reversible == Reaction formula...")
(Created page with "Category:reaction == Reaction 2.7.1.148-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.148 ec-2.7.1.148] * direction: ** left-to-right * common-name: ** 4-(cyti...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROTOHEMEFERROCHELAT-RXN ==
+
== Reaction 2.7.1.148-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.148 ec-2.7.1.148]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
+
* 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS14240]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS12270]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
+
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[HEMESYN2-PWY]], heme b biosynthesis II (anaerobic):
+
* [[PWY-7560]], methylerythritol phosphate pathway II:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_ibrahim_glycogen_03112020]]; tool: [[curation]]; comment: to improve flux in glycogen
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18438 18438]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05634 R05634]
−
* UNIPROT:
+
{{#set: ec-number=ec-2.7.1.148}}
−
** [http://www.uniprot.org/uniprot/P22830 P22830]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P22315 P22315]
+
{{#set: common-name=4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase}}
−
** [http://www.uniprot.org/uniprot/P28602 P28602]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/Q05338 Q05338]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P42043 P42043]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/P23871 P23871]
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P32396 P32396]
+
{{#set: reconstruction comment=n.a}}
−
** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
+
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
−
** [http://www.uniprot.org/uniprot/P56107 P56107]
 
−
** [http://www.uniprot.org/uniprot/O67083 O67083]
 
−
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
 
−
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
 
−
** [http://www.uniprot.org/uniprot/P22600 P22600]
 
−
** [http://www.uniprot.org/uniprot/P43868 P43868]
 
−
** [http://www.uniprot.org/uniprot/P16622 P16622]
 
−
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
 
−
** [http://www.uniprot.org/uniprot/P43413 P43413]
 
−
** [http://www.uniprot.org/uniprot/P54225 P54225]
 
−
** [http://www.uniprot.org/uniprot/P42045 P42045]
 
−
** [http://www.uniprot.org/uniprot/O64391 O64391]
 
−
** [http://www.uniprot.org/uniprot/P42044 P42044]
 
−
</div>
 
−
{{#set: ec-number=ec-4.99.1.1}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction tool=curation}}
 
−
{{#set: reconstruction comment=to improve flux in glycogen}}
 
−
{{#set: reconstruction source=reactions_add_ibrahim_glycogen_03112020}}
 

Revision as of 19:05, 13 January 2021

Reaction 2.7.1.148-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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