Difference between revisions of "FISUC RS02460"

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(Created page with "Category:reaction == Reaction 4.2.1.59-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [...")
(Created page with "Category:reaction == Reaction RXN-10780 == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3] * direction: ** left-to-right == Reaction formula == * 1 5-HY...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 4.2.1.59-RXN ==
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== Reaction RXN-10780 ==
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
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* common-name:
 
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** 3-hydroxyacyl-acp dehydratase fabz
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''=>''' 1 [[2-Octenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[5-HYDROXYINDOLE_ACETATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[FSU_RS01755]]
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* Gene: [[FSU_RS01730]]
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** Category: [[manual]]
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** Category: [[orthology]]
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*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS01735]]
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS14115]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS00310]]
 
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** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS00290]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
+
* [[PWY-6313]], serotonin degradation:
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** '''20''' reactions found over '''31''' reactions in the full pathway
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
 
−
** '''22''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31216 31216]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04903 R04903]
 +
{{#set: ec-number=ec-1.2.1.3}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
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{{#set: nb gene associated=1}}
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{{#set: nb gene associated=5}}
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{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=curation}}
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
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{{#set: reconstruction comment=present in the annotation part of the emile network.}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=reactions_add_147_emile_annot}}
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Revision as of 19:05, 13 January 2021

Reaction RXN-10780

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6313, serotonin degradation:
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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