Difference between revisions of "FSU RS05440"

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(Created page with "Category:reaction == Reaction 3.2.1.55-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.55 ec-3.2.1.55] * direction: ** left-to-right == Reaction formula == * 1 [...")
(Created page with "Category:reaction == Reaction PEPSYNTH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.9.2 ec-2.7.9.2] * direction: ** reversible == Reaction formula == * 1 [[ATP]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.55-RXN ==
+
== Reaction PEPSYNTH-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.55 ec-3.2.1.55]
+
** [http://enzyme.expasy.org/EC/2.7.9.2 ec-2.7.9.2]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-5-L-Arabinooligosaccharides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-5-L-Arabinooligosaccharides]][c] '''+''' 1 [[CPD-12045]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS15840]]
 
−
** Category: [[manual]]
 
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''11''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
+
* category: [[manual]]; source: [[reactions_add_ibrahim_23092020]]; tool: [[curation]]; comment: to improve flux
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11365 11365]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00199 R00199]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P82594 P82594]
+
** [http://www.uniprot.org/uniprot/P56070 P56070]
−
** [http://www.uniprot.org/uniprot/Q9KBQ8 Q9KBQ8]
+
** [http://www.uniprot.org/uniprot/O57830 O57830]
−
** [http://www.uniprot.org/uniprot/P42255 P42255]
+
** [http://www.uniprot.org/uniprot/Q9ZMV4 Q9ZMV4]
−
** [http://www.uniprot.org/uniprot/P53627 P53627]
+
** [http://www.uniprot.org/uniprot/Q9YEC5 Q9YEC5]
−
** [http://www.uniprot.org/uniprot/P49943 P49943]
+
** [http://www.uniprot.org/uniprot/Q57962 Q57962]
−
{{#set: ec-number=ec-3.2.1.55}}
+
** [http://www.uniprot.org/uniprot/O29548 O29548]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9V2H7 Q9V2H7]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/O27190 O27190]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/O67899 O67899]
 +
** [http://www.uniprot.org/uniprot/Q9JVI5 Q9JVI5]
 +
** [http://www.uniprot.org/uniprot/P42850 P42850]
 +
** [http://www.uniprot.org/uniprot/P23538 P23538]
 +
** [http://www.uniprot.org/uniprot/P46893 P46893]
 +
** [http://www.uniprot.org/uniprot/Q55905 Q55905]
 +
** [http://www.uniprot.org/uniprot/O83026 O83026]
 +
</div>
 +
{{#set: ec-number=ec-2.7.9.2}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=manual}}
 
{{#set: reconstruction category=manual}}
 
{{#set: reconstruction tool=curation}}
 
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
+
{{#set: reconstruction comment=to improve flux}}
−
{{#set: reconstruction source=reactions_add_147_emile_annot}}
+
{{#set: reconstruction source=reactions_add_ibrahim_23092020}}

Revision as of 19:07, 13 January 2021

Reaction PEPSYNTH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 12 reactions found over 12 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 7 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 11 reactions found over 11 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 11 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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