Difference between revisions of "FSU RS05775"

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(Created page with "Category:reaction == Reaction 3.1.26.4-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4] * direction: ** left-to-right * common-name: ** ribonuclea...")
(Created page with "Category:reaction == Reaction RXN-12263 == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103] * direction: ** left-to-right == Reaction formula == * 2 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.26.4-RXN ==
+
== Reaction RXN-12263 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4]
+
** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** ribonuclease hii
 
−
** ribonuclease h
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RNA-DNA-hybrids]][c] '''+''' n [[WATER]][c] '''=>''' 1 [[DNA-Holder]][c] '''+''' n [[Nucleoside-Monophosphates]][c]
+
* 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01150]]
+
* Gene: [[FSU_RS01865]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
* Gene: [[FSU_RS15575]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS13600]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS14960]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5875]], staphyloxanthin biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria):
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis:
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P52975 P52975]
+
** [http://www.uniprot.org/uniprot/O69445 O69445]
−
** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
+
** [http://www.uniprot.org/uniprot/P36596 P36596]
−
** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
+
** [http://www.uniprot.org/uniprot/O65688 O65688]
−
** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
+
** [http://www.uniprot.org/uniprot/O23118 O23118]
−
** [http://www.uniprot.org/uniprot/P43807 P43807]
+
** [http://www.uniprot.org/uniprot/O22107 O22107]
−
** [http://www.uniprot.org/uniprot/P43808 P43808]
+
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
−
** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
+
** [http://www.uniprot.org/uniprot/O22106 O22106]
−
** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
+
** [http://www.uniprot.org/uniprot/P53800 P53800]
−
** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
+
** [http://www.uniprot.org/uniprot/P53799 P53799]
−
** [http://www.uniprot.org/uniprot/Q57599 Q57599]
+
** [http://www.uniprot.org/uniprot/P53798 P53798]
−
** [http://www.uniprot.org/uniprot/O44114 O44114]
+
** [http://www.uniprot.org/uniprot/P29704 P29704]
−
** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
+
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
−
** [http://www.uniprot.org/uniprot/P10442 P10442]
+
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
−
** [http://www.uniprot.org/uniprot/P13319 P13319]
+
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
−
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
+
** [http://www.uniprot.org/uniprot/P37268 P37268]
−
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
+
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
−
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
−
** [http://www.uniprot.org/uniprot/O69014 O69014]
+
{{#set: ec-number=ec-2.5.1.103}}
−
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 
−
</div>
 
−
{{#set: ec-number=ec-3.1.26.4}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonuclease hii|ribonuclease h}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}
−
{{#set: reconstruction source=genome}}
 

Revision as of 19:09, 13 January 2021

Reaction RXN-12263

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5875, staphyloxanthin biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072, hopanoid biosynthesis (bacteria):
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6105, botryococcenes and methylated squalene biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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