Difference between revisions of "FISUC RS03645"

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(Created page with "Category:reaction == Reaction DIHYDRODIPICSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7] * direction: ** left-to-right * common-name: ** 4-hyd...")
(Created page with "Category:reaction == Reaction GARTRANSFORMYL2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2 ec-2.1.2] * direction: ** left-to-right == Reaction formula == * 1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIHYDRODIPICSYN-RXN ==
+
== Reaction GARTRANSFORMYL2-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7]
+
** [http://enzyme.expasy.org/EC/2.1.2 ec-2.1.2]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 4-hydroxy-tetrahydrodipicolinate synthase
 
−
* synonymous:
 
−
** dihydrodipicolinic acid synthase
 
−
** dihydropicolinate synthetase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS03675]]
+
* Gene: [[FSU_RS04650]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* Gene: [[FISUC_RS01795]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2941]], L-lysine biosynthesis II:
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24830 24830]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06974 R06974]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02292 R02292]
+
{{#set: ec-number=ec-2.1.2}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43797 P43797]
 
−
** [http://www.uniprot.org/uniprot/O26892 O26892]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
 
−
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
 
−
** [http://www.uniprot.org/uniprot/P19808 P19808]
 
−
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
 
−
** [http://www.uniprot.org/uniprot/O05969 O05969]
 
−
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
 
−
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
 
−
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
 
−
** [http://www.uniprot.org/uniprot/O25657 O25657]
 
−
** [http://www.uniprot.org/uniprot/O67216 O67216]
 
−
** [http://www.uniprot.org/uniprot/O29352 O29352]
 
−
** [http://www.uniprot.org/uniprot/O84366 O84366]
 
−
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
 
−
** [http://www.uniprot.org/uniprot/P63945 P63945]
 
−
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
 
−
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
 
−
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
 
−
** [http://www.uniprot.org/uniprot/P49423 P49423]
 
−
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
 
−
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
 
−
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
 
−
** [http://www.uniprot.org/uniprot/Q42940 Q42940]
 
−
** [http://www.uniprot.org/uniprot/O86841 O86841]
 
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** [http://www.uniprot.org/uniprot/P24847 P24847]
 
−
** [http://www.uniprot.org/uniprot/P24846 P24846]
 
−
</div>
 
−
{{#set: ec-number=ec-4.3.3.7}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-hydroxy-tetrahydrodipicolinate synthase}}
+
{{#set: nb gene associated=1}}
−
{{#set: synonymous=dihydrodipicolinic acid synthase|dihydropicolinate synthetase}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli}}

Revision as of 19:09, 13 January 2021

Reaction GARTRANSFORMYL2-RXN

  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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