Difference between revisions of "FISUC RS11085"

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(Created page with "Category:reaction == Reaction PYRIMSYN1-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.17 ec-4.1.99.17] * direction: ** left-to-right * common-name: ** phospho...")
(Created page with "Category:reaction == Reaction RXN0-5462 == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.5.1 ec-3.6.5.1] ** [http://enzyme.expasy.org/EC/3.6.5.2 ec-3.6.5.2] ** [http://...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRIMSYN1-RXN ==
+
== Reaction RXN0-5462 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.99.17 ec-4.1.99.17]
+
** [http://enzyme.expasy.org/EC/3.6.5.1 ec-3.6.5.1]
 +
** [http://enzyme.expasy.org/EC/3.6.5.2 ec-3.6.5.2]
 +
** [http://enzyme.expasy.org/EC/3.6.5.3 ec-3.6.5.3]
 +
** [http://enzyme.expasy.org/EC/3.6.5.4 ec-3.6.5.4]
 +
** [http://enzyme.expasy.org/EC/3.6.5.5 ec-3.6.5.5]
 +
** [http://enzyme.expasy.org/EC/3.6.5.6 ec-3.6.5.6]
 +
** [http://enzyme.expasy.org/EC/3.6.1.15 ec-3.6.1.15]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphomethylpyrimidine synthase thic
+
** gtpase hflx
 +
** ribosome small subunit-dependent gtpase a
 +
** gtpase
 +
** gtpase obge
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[CARBON-MONOXIDE]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[MET]][c] '''+''' 3 [[PROTON]][c]
+
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS04020]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS01580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS02135]]
+
* Gene: [[FSU_RS03610]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS03025]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01145]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS00240]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS15385]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS01730]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS02110]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24841 24841]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19670 19670]
−
{{#set: ec-number=ec-4.1.99.17}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00335 R00335]
 +
{{#set: ec-number=ec-3.6.5.1|ec-3.6.5.5|ec-3.6.5.4|ec-3.6.5.2|ec-3.6.5.6|ec-3.6.5.3|ec-3.6.1.15}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphomethylpyrimidine synthase thic}}
+
{{#set: common-name=ribosome small subunit-dependent gtpase a|gtpase hflx|gtpase obge|gtpase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=genome|ecoli}}

Revision as of 19:09, 13 January 2021

Reaction RXN0-5462

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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