Difference between revisions of "FSU RS14885"

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(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1] * direction: ** reversible * common-name: ** serine hydr...")
(Created page with "Category:reaction == Reaction GLUTAMATESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.13 ec-1.4.1.13] * direction: ** left-to-right * common-name: ** glutam...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYOHMETRANS-RXN ==
+
== Reaction GLUTAMATESYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/1.4.1.13 ec-1.4.1.13]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** serine hydroxymethyltransferase
+
** glutamate synthase large subunit
 +
** nadph-dependent glutamate synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 2 [[GLT]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS12485]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS11010]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS06385]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS14455]]
+
* Gene: [[FSU_RS11005]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS09065]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS04495]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GLUTSYN-PWY]], L-glutamate biosynthesis I:
−
* [[PWY-3841]], folate transformations II:
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
* [[GLUTAMINEFUM-PWY]], L-glutamine degradation II:
−
* [[PWY-181]], photorespiration:
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[GLYSYN-PWY]], glycine biosynthesis I:
 
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''9''' reactions found over '''24''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3661]], glycine betaine degradation I:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-2161]], folate polyglutamylation:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15503 15503]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00114 R00114]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
** [http://www.uniprot.org/uniprot/Q05756 Q05756]
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
** [http://www.uniprot.org/uniprot/Q05755 Q05755]
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
** [http://www.uniprot.org/uniprot/Q9PJA4 Q9PJA4]
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
** [http://www.uniprot.org/uniprot/Q9PJA2 Q9PJA2]
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
+
** [http://www.uniprot.org/uniprot/Q9CG25 Q9CG25]
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
+
** [http://www.uniprot.org/uniprot/Q58746 Q58746]
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
+
** [http://www.uniprot.org/uniprot/P09831 P09831]
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
+
** [http://www.uniprot.org/uniprot/Q9CG24 Q9CG24]
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
+
** [http://www.uniprot.org/uniprot/P09832 P09832]
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
+
** [http://www.uniprot.org/uniprot/P39812 P39812]
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
+
** [http://www.uniprot.org/uniprot/Q9S2Y9 Q9S2Y9]
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
+
{{#set: ec-number=ec-1.4.1.13}}
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
+
{{#set: common-name=glutamate synthase large subunit|nadph-dependent glutamate synthase}}
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
 
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
 
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
 
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
 
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
 
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
 
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
 
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
 
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
 
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
 
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
 
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
 
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
 
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
 
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
 
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
−
</div>
 
−
{{#set: ec-number=ec-2.1.2.1}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=serine hydroxymethyltransferase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=10}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bifidobacterium|genome|bthetaiotaomicron|ecoli}}

Revision as of 19:39, 13 January 2021

Reaction GLUTAMATESYN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • glutamate synthase large subunit
    • nadph-dependent glutamate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTSYN-PWY, L-glutamate biosynthesis I:
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTAMINEFUM-PWY, L-glutamine degradation II:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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