Difference between revisions of "FSU RS13255"

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(Created page with "Category:reaction == Reaction THREONINE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3] * direction: ** left-to-right * common-name: *...")
(Created page with "Category:reaction == Reaction GLYCOGENSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.21 ec-2.4.1.21] * direction: ** reversible * common-name: ** starch syn...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THREONINE--TRNA-LIGASE-RXN ==
+
== Reaction GLYCOGENSYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
+
** [http://enzyme.expasy.org/EC/2.4.1.21 ec-2.4.1.21]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** threonine--trna ligase
+
** starch synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[1-4-alpha-D-Glucan]][c] '''+''' 1 [[ADP-D-GLUCOSE]][c] '''<=>''' 1 [[1-4-alpha-D-Glucan]][c] '''+''' 1 [[ADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS12440]]
+
* Gene: [[FISUC_RS15965]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS10475]]
+
* Gene: [[FSU_RS16140]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-622]], starch biosynthesis:
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
Line 24: Line 26:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18192 18192]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02421 R02421]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
** [http://www.uniprot.org/uniprot/P45179 P45179]
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
** [http://www.uniprot.org/uniprot/Q40739 Q40739]
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
+
** [http://www.uniprot.org/uniprot/P39125 P39125]
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
+
** [http://www.uniprot.org/uniprot/Q43784 Q43784]
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
+
** [http://www.uniprot.org/uniprot/P72623 P72623]
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
+
** [http://www.uniprot.org/uniprot/P0A6U8 P0A6U8]
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
+
** [http://www.uniprot.org/uniprot/O48899 O48899]
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
+
** [http://www.uniprot.org/uniprot/O48900 O48900]
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
+
** [http://www.uniprot.org/uniprot/O49064 O49064]
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
+
** [http://www.uniprot.org/uniprot/Q43654 Q43654]
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
+
** [http://www.uniprot.org/uniprot/P93568 P93568]
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
+
** [http://www.uniprot.org/uniprot/O48515 O48515]
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
+
** [http://www.uniprot.org/uniprot/O48516 O48516]
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
+
** [http://www.uniprot.org/uniprot/O64925 O64925]
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
+
** [http://www.uniprot.org/uniprot/Q42857 Q42857]
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
+
** [http://www.uniprot.org/uniprot/Q00775 Q00775]
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
 
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
 
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
 
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
 
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
 
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
 
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-6.1.1.3}}
+
{{#set: ec-number=ec-2.4.1.21}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=threonine--trna ligase}}
+
{{#set: common-name=starch synthase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=genome}}
 
{{#set: reconstruction source=genome}}

Revision as of 19:39, 13 January 2021

Reaction GLYCOGENSYN-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • starch synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCOGENSYNTH-PWY, glycogen biosynthesis I (from ADP-D-Glucose):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-622, starch biosynthesis:
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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