Difference between revisions of "VAL-tRNAs"
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(Created page with "Category:gene == Gene FSU_RS10115 == * common-name: ** lepb * transcription-direction: ** positive * centisome-position: ** 63.827724 * left-end-position: ** 2452902 *...") |
(Created page with "Category:gene == Gene FSU_RS02790 == * common-name: ** trpb * transcription-direction: ** positive * centisome-position: ** 16.984577 * left-end-position: ** 652718 *...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene FSU_RS02790 == |
* common-name: | * common-name: | ||
| − | ** | + | ** trpb |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 16.984577 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 652718 |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 653995 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[fibrobacter_final_03112020]] | * [[fibrobacter_final_03112020]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[RXN0-2381]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: common-name= | + | ** Category: [[orthology]] |
| + | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * [[RXN0-2382]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * [[TRYPSYN-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
| + | </div> | ||
| + | == Pathway(s) associated == | ||
| + | * [[TRPSYN-PWY]] | ||
| + | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-6949]] | ||
| + | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
| + | {{#set: common-name=trpb}} | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
| − | {{#set: centisome-position= | + | {{#set: centisome-position=16.984577 }} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=652718}} |
| − | {{#set: right-end-position= | + | {{#set: right-end-position=653995}} |
{{#set: organism associated=fibrobacter_final_03112020}} | {{#set: organism associated=fibrobacter_final_03112020}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| + | {{#set: nb pathway associated=2}} | ||
Revision as of 11:49, 15 January 2021
Contents
Gene FSU_RS02790
- common-name:
- trpb
- transcription-direction:
- positive
- centisome-position:
- 16.984577
- left-end-position:
- 652718
- right-end-position:
- 653995
Organism(s) associated with this gene
Reaction(s) associated
- RXN0-2381
- Category: annotation
- source: genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: ecoli; tool: orthofinder; comment: n.a
- Category: annotation
- RXN0-2382
- Category: annotation
- source: genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: ecoli; tool: orthofinder; comment: n.a
- Category: annotation
- TRYPSYN-RXN
- Category: annotation
- source: genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: ecoli; tool: orthofinder; comment: n.a
- source: plantarum; tool: orthofinder; comment: n.a
- Category: annotation
Pathway(s) associated
- TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-6949
- 1 reactions found over 6 reactions in the full pathway
