Difference between revisions of "FISUC RS10855"

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(Created page with "Category:reaction == Reaction FPPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10] * direction: ** left-to-right == Reaction formula == * 1 D...")
(Created page with "Category:reaction == Reaction DTDPDEHYDRHAMEPIM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13] * direction: ** left-to-right * common-name: ** d...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FPPSYN-RXN ==
+
== Reaction DTDPDEHYDRHAMEPIM-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
+
** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** dtdp-4-dehydrorhamnose 3,5-epimerase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS10165]]
+
* Gene: [[FISUC_RS03895]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FSU_RS05790]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS06175]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7736]], stellatic acid biosynthesis:
+
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis:
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
+
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
+
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06514 R06514]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
** [http://www.uniprot.org/uniprot/Q9JWX1 Q9JWX1]
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
** [http://www.uniprot.org/uniprot/Q9JWW7 Q9JWW7]
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
** [http://www.uniprot.org/uniprot/Q9UZG9 Q9UZG9]
−
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
+
** [http://www.uniprot.org/uniprot/P37745 P37745]
−
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
+
** [http://www.uniprot.org/uniprot/Q7M0V5 Q7M0V5]
−
** [http://www.uniprot.org/uniprot/P45204 P45204]
+
** [http://www.uniprot.org/uniprot/P37763 P37763]
−
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
+
** [http://www.uniprot.org/uniprot/Q46770 Q46770]
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
** [http://www.uniprot.org/uniprot/P29783 P29783]
−
** [http://www.uniprot.org/uniprot/P22939 P22939]
+
{{#set: ec-number=ec-5.1.3.13}}
−
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
 
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
 
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
 
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
 
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
 
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
 
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
 
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
 
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
 
−
** [http://www.uniprot.org/uniprot/O14230 O14230]
 
−
</div>
 
−
{{#set: ec-number=ec-2.5.1.10}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 +
{{#set: common-name=dtdp-4-dehydrorhamnose 3,5-epimerase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|plantarum}}
+
{{#set: reconstruction source=genome}}

Revision as of 11:58, 15 January 2021

Reaction DTDPDEHYDRHAMEPIM-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • dtdp-4-dehydrorhamnose 3,5-epimerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 3 reactions found over 6 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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