Difference between revisions of "FISUC RS15510"

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(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11] * direction: ** left-to-right * common-name: **...")
(Created page with "Category:reaction == Reaction R12-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.27 ec-5.3.1.27] * direction: ** reversible == Reaction formula == * 1 [[CPD-26]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE--TRNA-LIGASE-RXN ==
+
== Reaction R12-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/5.3.1.27 ec-5.3.1.27]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** serine--trna ligase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-26]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS14025]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS12055]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-7796]], pentose phosphate pathway (oxidative branch) II:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[RUMP-PWY]], formaldehyde oxidation I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_26082020]]; tool: [[curation]]; comment: added to improve flux in sugars
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25900 25900]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05339 R05339]
−
* UNIPROT:
+
{{#set: ec-number=ec-5.3.1.27}}
−
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O51244 O51244]
+
{{#set: nb gene associated=0}}
−
** [http://www.uniprot.org/uniprot/O66647 O66647]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/O27194 O27194]
+
{{#set: reconstruction comment=added to improve flux in sugars}}
−
** [http://www.uniprot.org/uniprot/O84734 O84734]
+
{{#set: reconstruction source=reactions_add_ibrahim_26082020}}
−
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 
−
** [http://www.uniprot.org/uniprot/P47251 P47251]
 
−
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 
−
** [http://www.uniprot.org/uniprot/O83653 O83653]
 
−
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 
−
** [http://www.uniprot.org/uniprot/P49591 P49591]
 
−
** [http://www.uniprot.org/uniprot/P56458 P56458]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 
−
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 
−
** [http://www.uniprot.org/uniprot/P43833 P43833]
 
−
** [http://www.uniprot.org/uniprot/P26636 P26636]
 
−
** [http://www.uniprot.org/uniprot/P39919 P39919]
 
−
** [http://www.uniprot.org/uniprot/P37464 P37464]
 
−
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 
−
** [http://www.uniprot.org/uniprot/P75107 P75107]
 
−
** [http://www.uniprot.org/uniprot/P73201 P73201]
 
−
** [http://www.uniprot.org/uniprot/O82108 O82108]
 
−
** [http://www.uniprot.org/uniprot/O82110 O82110]
 
−
** [http://www.uniprot.org/uniprot/O81983 O81983]
 
−
** [http://www.uniprot.org/uniprot/O45887 O45887]
 
−
** [http://www.uniprot.org/uniprot/O14018 O14018]
 
−
** [http://www.uniprot.org/uniprot/P54221 P54221]
 
−
** [http://www.uniprot.org/uniprot/P07284 P07284]
 
−
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 
−
</div>
 
−
{{#set: ec-number=ec-6.1.1.11}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=serine--trna ligase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome}}
 

Revision as of 11:59, 15 January 2021

Reaction R12-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7796, pentose phosphate pathway (oxidative branch) II:
    • 2 reactions found over 2 reactions in the full pathway
  • RUMP-PWY, formaldehyde oxidation I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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