Difference between revisions of "FSU RS03125"

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(Created page with "Category:reaction == Reaction METHYLENETHFDEHYDROG-NADP-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5] * direction: ** reversible * common-name: *...")
(Created page with "Category:reaction == Reaction NAD-SYNTH-GLN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1] * direction: ** left-to-right == Reaction formula == *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLENETHFDEHYDROG-NADP-RXN ==
+
== Reaction NAD-SYNTH-GLN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5]
+
** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS09440]]
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* Gene: [[FSU_RS11015]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS07515]]
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* Gene: [[FSU_RS00020]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
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* [[PWY-5381]], pyridine nucleotide cycling (plants):
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-2201]], folate transformations I:
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* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
−
** '''9''' reactions found over '''12''' reactions in the full pathway
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** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II:
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* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
+
* [[PWY3O-4107]], NAD salvage pathway V (PNC V cycle):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
+
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
+
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''9''' reactions found over '''24''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22815 22815]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24385 24385]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00257 R00257]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
** [http://www.uniprot.org/uniprot/Q9PPB0 Q9PPB0]
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
** [http://www.uniprot.org/uniprot/Q9JTY7 Q9JTY7]
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
** [http://www.uniprot.org/uniprot/Q9CGJ4 Q9CGJ4]
−
** [http://www.uniprot.org/uniprot/P44313 P44313]
+
** [http://www.uniprot.org/uniprot/Q9Z4V9 Q9Z4V9]
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** [http://www.uniprot.org/uniprot/P47259 P47259]
+
{{#set: ec-number=ec-6.3.5.1}}
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** [http://www.uniprot.org/uniprot/P54382 P54382]
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{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/O67736 O67736]
 
−
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
 
−
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
 
−
** [http://www.uniprot.org/uniprot/P24186 P24186]
 
−
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
 
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 
−
** [http://www.uniprot.org/uniprot/P51696 P51696]
 
−
** [http://www.uniprot.org/uniprot/O65269 O65269]
 
−
** [http://www.uniprot.org/uniprot/O65271 O65271]
 
−
** [http://www.uniprot.org/uniprot/O68031 O68031]
 
−
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
 
−
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
 
−
</div>
 
−
{{#set: ec-number=ec-1.5.1.5}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bthetaiotaomicron}}

Revision as of 12:02, 15 January 2021

Reaction NAD-SYNTH-GLN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5381, pyridine nucleotide cycling (plants):
    • 5 reactions found over 11 reactions in the full pathway
  • PYRIDNUCSAL-PWY, NAD salvage pathway I (PNC VI cycle):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7761, NAD salvage pathway II (PNC IV cycle):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY3O-4107, NAD salvage pathway V (PNC V cycle):
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSYN-PWY, NAD de novo biosynthesis I (from aspartate):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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