Difference between revisions of "FSU RS14885"

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(Created page with "Category:reaction == Reaction GLUTAMATESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.13 ec-1.4.1.13] * direction: ** left-to-right * common-name: ** glutam...")
(Created page with "Category:reaction == Reaction RXN-11598 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.193 ec-2.1.1.193] * direction: ** left-to-right * common-name: ** 16s rrna (u...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATESYN-RXN ==
+
== Reaction RXN-11598 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.13 ec-1.4.1.13]
+
** [http://enzyme.expasy.org/EC/2.1.1.193 ec-2.1.1.193]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate synthase large subunit
+
** 16s rrna (uracil(1498)-n(3))-methyltransferase
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** nadph-dependent glutamate synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 2 [[GLT]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[16S-rRNA-uracil1498]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[16S-rRNA-N3-methyluracil1498]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[FSU_RS04640]]
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* Gene: [[FSU_RS11010]]
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS06385]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS11005]]
+
* Gene: [[FISUC_RS02750]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS09065]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS04495]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTSYN-PWY]], L-glutamate biosynthesis I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[GLUTAMINEFUM-PWY]], L-glutamine degradation II:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15503 15503]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42921 42921]
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.1.1.193}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00114 R00114]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q05756 Q05756]
 
−
** [http://www.uniprot.org/uniprot/Q05755 Q05755]
 
−
** [http://www.uniprot.org/uniprot/Q9PJA4 Q9PJA4]
 
−
** [http://www.uniprot.org/uniprot/Q9PJA2 Q9PJA2]
 
−
** [http://www.uniprot.org/uniprot/Q9CG25 Q9CG25]
 
−
** [http://www.uniprot.org/uniprot/Q58746 Q58746]
 
−
** [http://www.uniprot.org/uniprot/P09831 P09831]
 
−
** [http://www.uniprot.org/uniprot/Q9CG24 Q9CG24]
 
−
** [http://www.uniprot.org/uniprot/P09832 P09832]
 
−
** [http://www.uniprot.org/uniprot/P39812 P39812]
 
−
** [http://www.uniprot.org/uniprot/Q9S2Y9 Q9S2Y9]
 
−
{{#set: ec-number=ec-1.4.1.13}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate synthase large subunit|nadph-dependent glutamate synthase}}
+
{{#set: common-name=16s rrna (uracil(1498)-n(3))-methyltransferase}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|genome|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 12:02, 15 January 2021

Reaction RXN-11598

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • 16s rrna (uracil(1498)-n(3))-methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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