Difference between revisions of "FSU RS07260"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
(Created page with "Category:reaction == Reaction RXN-16401 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LUMAZINESYN-RXN ==
+
== Reaction RXN-16401 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 6,7-dimethyl-8-ribityllumazine synthase
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** long-chain fatty acid--coa ligase
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-17640]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-17641]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS15715]]
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* Gene: [[FISUC_RS12045]]
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** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS13750]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* Gene: [[FSU_RS15725]]
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* Gene: [[FSU_RS14015]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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* [[PWY-6733]], sporopollenin precursors biosynthesis:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** '''4''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
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{{#set: ec-number=ec-6.2.1.3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
 
−
{{#set: ec-number=ec-2.5.1.78}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
+
{{#set: common-name=long-chain fatty acid--coa ligase}}
−
{{#set: nb gene associated=3}}
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{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
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{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 12:03, 15 January 2021

Reaction RXN-16401

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid--coa ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6733, sporopollenin precursors biosynthesis:
    • 4 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS07260&oldid=67534"