Difference between revisions of "FISUC RS08250"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPSYN-RXN ==
+
== Reaction KDPGALDOL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
+
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 +
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FISUC_RS07950]]
−
* Gene: [[FISUC_RS00910]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS02795]]
+
* Gene: [[FSU_RS09880]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS00915]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS02790]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7310]], D-glucosaminate degradation:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7242]], D-fructuronate degradation:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7562]], 3,6-anhydro-&alpha;-L-galactopyranose degradation:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** [http://www.uniprot.org/uniprot/P44480 P44480]
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** [http://www.uniprot.org/uniprot/P00885 P00885]
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** [http://www.uniprot.org/uniprot/O25729 O25729]
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** [http://www.uniprot.org/uniprot/O83578 O83578]
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
+
** [http://www.uniprot.org/uniprot/P50846 P50846]
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
** [http://www.uniprot.org/uniprot/P38448 P38448]
−
** [http://www.uniprot.org/uniprot/P12290 P12290]
+
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
** [http://www.uniprot.org/uniprot/P94802 P94802]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
+
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
 
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
 
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
 
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
 
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
 
−
** [http://www.uniprot.org/uniprot/P07601 P07601]
 
−
** [http://www.uniprot.org/uniprot/P06561 P06561]
 
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
 
−
** [http://www.uniprot.org/uniprot/P06562 P06562]
 
−
** [http://www.uniprot.org/uniprot/O27696 O27696]
 
−
** [http://www.uniprot.org/uniprot/O28672 O28672]
 
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
 
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 
−
** [http://www.uniprot.org/uniprot/P43760 P43760]
 
−
** [http://www.uniprot.org/uniprot/P34817 P34817]
 
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
 
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
 
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
 
−
** [http://www.uniprot.org/uniprot/P19868 P19868]
 
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
 
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
 
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
 
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
 
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
 
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
 
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
 
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
 
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
 
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
−
</div>
 
−
{{#set: ec-number=ec-4.2.1.20}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}

Revision as of 12:03, 15 January 2021

Reaction KDPGALDOL-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 8 reactions found over 9 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff shunt:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7310, D-glucosaminate degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation:
    • 2 reactions found over 7 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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