Difference between revisions of "FSU RS03125"

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(Created page with "Category:reaction == Reaction NAD-SYNTH-GLN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1] * direction: ** left-to-right == Reaction formula == *...")
(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25] * direction: ** left-to-right * common-na...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NAD-SYNTH-GLN-RXN ==
+
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.1 ec-6.3.5.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** shikimate dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS11015]]
+
* Gene: [[FISUC_RS11285]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS00020]]
+
* Gene: [[FSU_RS13250]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5381]], pyridine nucleotide cycling (plants):
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY3O-4107]], NAD salvage pathway V (PNC V cycle):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24385 24385]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00257 R00257]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PPB0 Q9PPB0]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/Q9JTY7 Q9JTY7]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/Q9CGJ4 Q9CGJ4]
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
** [http://www.uniprot.org/uniprot/Q9Z4V9 Q9Z4V9]
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
{{#set: ec-number=ec-6.3.5.1}}
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
 +
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 +
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 +
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 +
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 +
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 +
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 +
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 +
** [http://www.uniprot.org/uniprot/P15770 P15770]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 +
</div>
 +
{{#set: ec-number=ec-1.1.1.25}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 +
{{#set: common-name=shikimate dehydrogenase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bthetaiotaomicron}}
+
{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}

Revision as of 16:00, 18 March 2021

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • shikimate dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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