Difference between revisions of "FSU RS02760"

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(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46] * direction: ** left-to-right * common-name: ** dt...")
(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 ...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTDPGLUCDEHYDRAT-RXN ==
+
== Reaction TRYPSYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
+
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** dtdp-glucose 4,6-dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS03900]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS02790]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS06780]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS05795]]
+
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS00910]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS02795]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS00915]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
+
** [http://www.uniprot.org/uniprot/P11081 P11081]
−
** [http://www.uniprot.org/uniprot/P44914 P44914]
+
** [http://www.uniprot.org/uniprot/P14671 P14671]
−
** [http://www.uniprot.org/uniprot/P29782 P29782]
+
** [http://www.uniprot.org/uniprot/P13228 P13228]
−
** [http://www.uniprot.org/uniprot/P27830 P27830]
+
** [http://www.uniprot.org/uniprot/P18284 P18284]
−
** [http://www.uniprot.org/uniprot/P55294 P55294]
+
** [http://www.uniprot.org/uniprot/P43759 P43759]
−
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
+
** [http://www.uniprot.org/uniprot/O84172 O84172]
−
** [http://www.uniprot.org/uniprot/P37759 P37759]
+
** [http://www.uniprot.org/uniprot/P11080 P11080]
−
** [http://www.uniprot.org/uniprot/P26391 P26391]
+
** [http://www.uniprot.org/uniprot/P16608 P16608]
−
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
+
** [http://www.uniprot.org/uniprot/P18285 P18285]
−
** [http://www.uniprot.org/uniprot/P39630 P39630]
+
** [http://www.uniprot.org/uniprot/P16706 P16706]
−
** [http://www.uniprot.org/uniprot/P37777 P37777]
+
** [http://www.uniprot.org/uniprot/P12290 P12290]
−
** [http://www.uniprot.org/uniprot/P37761 P37761]
+
** [http://www.uniprot.org/uniprot/P42391 P42391]
−
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
+
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
−
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
+
** [http://www.uniprot.org/uniprot/P12291 P12291]
−
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
+
** [http://www.uniprot.org/uniprot/P42389 P42389]
−
** [http://www.uniprot.org/uniprot/P55293 P55293]
+
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
−
** [http://www.uniprot.org/uniprot/O66249 O66249]
+
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
−
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
+
** [http://www.uniprot.org/uniprot/P07600 P07600]
−
** [http://www.uniprot.org/uniprot/O08246 O08246]
+
** [http://www.uniprot.org/uniprot/P07601 P07601]
−
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
+
** [http://www.uniprot.org/uniprot/P06561 P06561]
−
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
+
** [http://www.uniprot.org/uniprot/P56142 P56142]
 +
** [http://www.uniprot.org/uniprot/P06562 P06562]
 +
** [http://www.uniprot.org/uniprot/O27696 O27696]
 +
** [http://www.uniprot.org/uniprot/O28672 O28672]
 +
** [http://www.uniprot.org/uniprot/O66923 O66923]
 +
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 +
** [http://www.uniprot.org/uniprot/P43760 P43760]
 +
** [http://www.uniprot.org/uniprot/P34817 P34817]
 +
** [http://www.uniprot.org/uniprot/P34816 P34816]
 +
** [http://www.uniprot.org/uniprot/P17167 P17167]
 +
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.46}}
+
{{#set: ec-number=ec-4.2.1.20}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=19}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli|bifidobacterium|plantarum}}

Revision as of 16:01, 18 March 2021

Reaction TRYPSYN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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