Difference between revisions of "FSU RS02125"

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(Created page with "Category:reaction == Reaction RXN-10659 == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100] * direction: ** left-to-right * common-name: ** 3-oxoacyl-a...")
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10659 ==
+
== Reaction KDPGALDOL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 +
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-acp reductase fabg
+
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
−
** 3-oxoacyl-[acyl-carrier-protein] reductase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-oxo-cis-D9-hexadecenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-hydroxy-cis-D9-hexaecenoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS12065]]
+
* Gene: [[FISUC_RS07950]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS01260]]
+
* Gene: [[FSU_RS09880]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS10110]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS15070]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate):
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7310]], D-glucosaminate degradation:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7242]], D-fructuronate degradation:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-1.1.1.100}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P44480 P44480]
 +
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 +
** [http://www.uniprot.org/uniprot/P00885 P00885]
 +
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 +
** [http://www.uniprot.org/uniprot/O25729 O25729]
 +
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 +
** [http://www.uniprot.org/uniprot/O83578 O83578]
 +
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 +
** [http://www.uniprot.org/uniprot/P50846 P50846]
 +
** [http://www.uniprot.org/uniprot/P38448 P38448]
 +
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 +
** [http://www.uniprot.org/uniprot/P94802 P94802]
 +
{{#set: ec-number=ec-4.1.2.14|ec-4.1.2.55}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxoacyl-acp reductase fabg|3-oxoacyl-[acyl-carrier-protein] reductase}}
+
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli}}

Revision as of 16:01, 18 March 2021

Reaction KDPGALDOL-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff shunt:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7310, D-glucosaminate degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation:
    • 2 reactions found over 7 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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