Difference between revisions of "FISUC RS08250"

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(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
(Created page with "Category:reaction == Reaction GLUTSEMIALDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41] * direction: ** left-to-right * common-name: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction KDPGALDOL-RXN ==
+
== Reaction GLUTSEMIALDEHYDROG-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
+
** glutamate-5-semialdehyde dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS07950]]
+
* Gene: [[FSU_RS01505]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS09880]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS15310]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
+
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
+
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7310]], D-glucosaminate degradation:
+
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7242]], D-fructuronate degradation:
+
* [[PWY-3341]], L-proline biosynthesis III:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
+
* [[PROSYN-PWY]], L-proline biosynthesis I:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19543 19543]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
+
** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
+
** [http://www.uniprot.org/uniprot/P45121 P45121]
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
+
** [http://www.uniprot.org/uniprot/P53000 P53000]
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
+
** [http://www.uniprot.org/uniprot/P07004 P07004]
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
+
** [http://www.uniprot.org/uniprot/P17857 P17857]
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
+
** [http://www.uniprot.org/uniprot/P45638 P45638]
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
+
** [http://www.uniprot.org/uniprot/P54885 P54885]
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
+
** [http://www.uniprot.org/uniprot/O04226 O04226]
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
+
{{#set: ec-number=ec-1.2.1.41}}
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
 
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
 
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
+
{{#set: common-name=glutamate-5-semialdehyde dehydrogenase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}

Revision as of 16:01, 18 March 2021

Reaction GLUTSEMIALDEHYDROG-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • glutamate-5-semialdehyde dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CITRULBIO-PWY, L-citrulline biosynthesis:
    • 8 reactions found over 8 reactions in the full pathway
  • ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6922, L-Nδ-acetylornithine biosynthesis:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III:
    • 5 reactions found over 5 reactions in the full pathway
  • PROSYN-PWY, L-proline biosynthesis I:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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