Difference between revisions of "RXN-14882"

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(Created page with "Category:metabolite == Metabolite 25-DIDEHYDRO-D-GLUCONATE == * common-name: ** 2,5-didehydro-d-gluconate * inchi-key: ** rxmwxenjqaincc-dmtcnviqsa-m * molecular-weight: *...")
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * common-name: ** 3-isopropylmalate dehydratase * direction: ** reversible * synonymous: ** β-isopropylmalate...")
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[[Category:metabolite]]
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[[Category:reaction]]
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== Metabolite 25-DIDEHYDRO-D-GLUCONATE ==
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== Reaction 3-ISOPROPYLMALISOM-RXN ==
 
* common-name:
 
* common-name:
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** 2,5-didehydro-d-gluconate
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** 3-isopropylmalate dehydratase
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* inchi-key:
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* direction:
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** rxmwxenjqaincc-dmtcnviqsa-m
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** reversible
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* molecular-weight:
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* synonymous:
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** 191.117
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** β-isopropylmalate dehydratase
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* smiles:
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** α-isopropylmalate isomerase
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** c(c([c@h]([c@@h](c(c([o-])=o)=o)o)o)=o)o
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** 3-isopropylmalate hydro-lyase
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== Reaction(s) known to consume the compound ==
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** (2r,3s)-3-isopropylmalate hydro-lyase
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* [[YIAE1-RXN]]
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== Reaction formula ==
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== Reaction(s) known to produce the compound ==
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* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
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== Reaction(s) of unknown directionality ==
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== Gene(s) associated with this reaction  ==
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{{#set: common-name=2,5-didehydro-d-gluconate}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: inchi-key=inchikey=rxmwxenjqaincc-dmtcnviqsa-m}}
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* Gene: [[FISUC_RS00345]]
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{{#set: molecular-weight=191.117}}
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** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[FISUC_RS00340]]
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** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[FSU_RS02215]]
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** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* Gene: [[FSU_RS02210]]
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** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
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** [http://www.uniprot.org/uniprot/P80858 P80858]
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
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** [http://www.uniprot.org/uniprot/P44968 P44968]
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
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** [http://www.uniprot.org/uniprot/P44438 P44438]
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
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** [http://www.uniprot.org/uniprot/P17279 P17279]
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** [http://www.uniprot.org/uniprot/P04787 P04787]
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** [http://www.uniprot.org/uniprot/P15717 P15717]
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** [http://www.uniprot.org/uniprot/P18250 P18250]
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
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** [http://www.uniprot.org/uniprot/P30126 P30126]
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** [http://www.uniprot.org/uniprot/P50181 P50181]
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** [http://www.uniprot.org/uniprot/P07264 P07264]
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** [http://www.uniprot.org/uniprot/P74207 P74207]
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** [http://www.uniprot.org/uniprot/O86534 O86534]
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** [http://www.uniprot.org/uniprot/O86535 O86535]
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</div>
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{{#set: common-name=3-isopropylmalate dehydratase}}
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{{#set: direction=reversible}}
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{{#set: synonymous=&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase}}
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{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=bthetaiotaomicron|genome|faecalibacterium|bifidobacterium|ecoli}}

Revision as of 18:03, 26 April 2021

Reaction 3-ISOPROPYLMALISOM-RXN

  • common-name:
    • 3-isopropylmalate dehydratase
  • direction:
    • reversible
  • synonymous:
    • β-isopropylmalate dehydratase
    • α-isopropylmalate isomerase
    • 3-isopropylmalate hydro-lyase
    • (2r,3s)-3-isopropylmalate hydro-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 6 reactions found over 7 reactions in the full pathway
  • LEUSYN-PWY, L-leucine biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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