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| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == | + | == Gene FISUC_RS04250 == |
| − | * ec-number: | + | * transcription-direction: |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25] | + | ** negative |
| − | * direction: | + | * centisome-position: |
| − | ** left-to-right | + | ** 27.363829 |
| − | * common-name: | + | * left-end-position: |
| − | ** shikimate dehydrogenase | + | ** 1051492 |
| − | == Reaction formula == | + | * right-end-position: |
| − | * 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c] | + | ** 1052751 |
| − | == Gene(s) associated with this reaction == | + | == Organism(s) associated with this gene == |
| − | * Gene: [[FISUC_RS11285]] | + | * [[fibrobacter_23042021]] |
| | + | == Reaction(s) associated == |
| | + | * [[2.7.13.3-RXN]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | *** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a |
| − | * Gene: [[FSU_RS13250]]
| + | {{#set: transcription-direction=negative}} |
| − | ** Category: [[annotation]]
| + | {{#set: centisome-position=27.363829 }} |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: left-end-position=1051492}} |
| − | ** Category: [[orthology]]
| + | {{#set: right-end-position=1052751}} |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=fibrobacter_23042021}} |
| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: nb reaction associated=1}} |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) ==
| |
| − | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P07547 P07547]
| |
| − | ** [http://www.uniprot.org/uniprot/P08566 P08566]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58484 Q58484]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44606 Q44606]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44608 Q44608]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44609 Q44609]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44610 Q44610]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44611 Q44611]
| |
| − | ** [http://www.uniprot.org/uniprot/Q44612 Q44612]
| |
| − | ** [http://www.uniprot.org/uniprot/P15770 P15770]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42947 Q42947]
| |
| − | ** [http://www.uniprot.org/uniprot/O65917 O65917]
| |
| − | </div>
| |
| − | {{#set: ec-number=ec-1.1.1.25}} | |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=shikimate dehydrogenase}} | |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=annotation|orthology}}
| |
| − | {{#set: reconstruction tool=pathwaytools|orthofinder}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
| |
