Difference between revisions of "FSU RS02760"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FISUC_RS06000 == * transcription-direction: ** positive * centisome-position: ** 38.69587 * left-end-position: ** 1486941 * right-end-position: *...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction TRYPSYN-RXN ==
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== Gene FISUC_RS06000 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 38.69587   
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== Reaction formula ==
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* left-end-position:
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* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** 1486941
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 1488605
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* Gene: [[FSU_RS02790]]
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== Organism(s) associated with this gene  ==
 +
* [[fibrobacter_23042021]]
 +
== Reaction(s) associated ==
 +
* [[PGLUCISOM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS00910]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS02795]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS00915]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
−
== Pathway(s)  ==
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* [[PWY-7385]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* LIGAND-RXN:
+
* [[PWY-7347]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* UNIPROT:
+
* [[PWY-7238]]
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
* [[PWY-622]]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
* [[PWY-5054]]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
* [[P124-PWY]]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** '''13''' reactions found over '''15''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
* [[UDPNACETYLGALSYN-PWY]]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
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** '''4''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
* [[UDPNAGSYN-PWY]]
−
** [http://www.uniprot.org/uniprot/P12290 P12290]
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** '''5''' reactions found over '''5''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
* [[P122-PWY]]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
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** '''14''' reactions found over '''18''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
* [[RUMP-PWY]]
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
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** '''4''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
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* [[PWY-6992]]
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
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** '''2''' reactions found over '''5''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
* [[PWY-5514]]
−
** [http://www.uniprot.org/uniprot/P07601 P07601]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P06561 P06561]
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* [[PWY-8013]]
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P06562 P06562]
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* [[SUCSYN-PWY]]
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** [http://www.uniprot.org/uniprot/O27696 O27696]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O28672 O28672]
+
* [[GLYCOLYSIS]]
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
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** '''11''' reactions found over '''12''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
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* [[ANAGLYCOLYSIS-PWY]]
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** [http://www.uniprot.org/uniprot/P43760 P43760]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P34817 P34817]
+
* [[PWY-3801]]
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
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** '''3''' reactions found over '''5''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
+
* [[PWY-5384]]
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P19868 P19868]
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* [[PWY66-399]]
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
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** '''11''' reactions found over '''12''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
+
* [[P341-PWY]]
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
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** '''6''' reactions found over '''10''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
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* [[GLUCONEO-PWY]]
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
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** '''13''' reactions found over '''13''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
+
* [[PWY-621]]
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
+
* [[PWY-6142]]
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
+
* [[PWY-5659]]
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
+
* [[PWY-6981]]
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: transcription-direction=positive}}
−
{{#set: direction=left-to-right}}
+
{{#set: centisome-position=38.69587    }}
−
{{#set: nb gene associated=4}}
+
{{#set: left-end-position=1486941}}
−
{{#set: nb pathway associated=0}}
+
{{#set: right-end-position=1488605}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: organism associated=fibrobacter_23042021}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: nb reaction associated=1}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=25}}
−
{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli|bifidobacterium|plantarum}}
 

Revision as of 18:11, 26 April 2021

Gene FISUC_RS06000

  • transcription-direction:
    • positive
  • centisome-position:
    • 38.69587
  • left-end-position:
    • 1486941
  • right-end-position:
    • 1488605

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7347
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7238
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-622
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-5054
    • 1 reactions found over 3 reactions in the full pathway
  • P124-PWY
    • 13 reactions found over 15 reactions in the full pathway
  • UDPNACETYLGALSYN-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • UDPNAGSYN-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6992
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5514
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-8013
    • 2 reactions found over 6 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-3801
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5384
    • 2 reactions found over 4 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-621
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5659
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6981
    • 4 reactions found over 3 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02760&oldid=78373"