Difference between revisions of "FISUC RS12770"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FSU_RS01295 == * transcription-direction: ** negative * centisome-position: ** 8.074179 * left-end-position: ** 310291 * right-end-position: ** 3...")
Line 1: Line 1:
[[Category:reaction]]
+
[[Category:gene]]
== Reaction RXN0-2382 ==
+
== Gene FSU_RS01295 ==
* ec-number:
+
* transcription-direction:
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
+
** negative
* direction:
+
* centisome-position:
** left-to-right
+
** 8.074179   
== Reaction formula ==
+
* left-end-position:
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** 310291
== Gene(s) associated with this reaction  ==
+
* right-end-position:
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 311244
* Gene: [[FISUC_RS00915]]
+
== Organism(s) associated with this gene  ==
 +
* [[fibrobacter_23042021]]
 +
== Reaction(s) associated ==
 +
* [[MYRISTOYLACYLTRAN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
* Gene: [[FSU_RS02790]]
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== Pathway(s) associated ==
** Category: [[annotation]]
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* [[KDO-LIPASYN-PWY]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
** Category: [[orthology]]
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* [[KDO-NAGLIPASYN-PWY]]
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''5''' reactions found over '''4''' reactions in the full pathway
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: transcription-direction=negative}}
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: centisome-position=8.074179    }}
* Gene: [[FISUC_RS00910]]
+
{{#set: left-end-position=310291}}
** Category: [[annotation]]
+
{{#set: right-end-position=311244}}
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
{{#set: organism associated=fibrobacter_23042021}}
* Gene: [[FSU_RS02795]]
+
{{#set: nb reaction associated=1}}
** Category: [[annotation]]
+
{{#set: nb pathway associated=2}}
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
</div>
 
== Pathway(s) ==
 
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
 
{{#set: ec-number=ec-4.2.1.122}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=bthetaiotaomicron|ecoli|bifidobacterium|genome}}
 

Revision as of 18:11, 26 April 2021

Gene FSU_RS01295

  • transcription-direction:
    • negative
  • centisome-position:
    • 8.074179
  • left-end-position:
    • 310291
  • right-end-position:
    • 311244

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated