Difference between revisions of "FISUC RS11085"

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(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:gene == Gene FSU_RS00455 == * transcription-direction: ** positive * centisome-position: ** 2.7036662 * left-end-position: ** 103902 * right-end-position: **...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DUDPKIN-RXN ==
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== Gene FSU_RS00455 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 2.7036662   
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* common-name:
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* left-end-position:
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** nucleoside-diphosphate kinase
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** 103902
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
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** 105659
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS12530]]
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* [[fibrobacter_23042021]]
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== Reaction(s) associated ==
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* [[ATPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15240]]
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== Pathway(s) associated ==
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** Category: [[orthology]]
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* [[PWY-7980]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* Gene: [[FSU_RS14500]]
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{{#set: transcription-direction=positive}}
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** Category: [[annotation]]
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{{#set: centisome-position=2.7036662    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=103902}}
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** Category: [[orthology]]
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{{#set: right-end-position=105659}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: organism associated=fibrobacter_23042021}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction associated=1}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: nb pathway associated=1}}
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== Pathway(s) ==
 
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
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** '''11''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28583 28583]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
 
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{{#set: ec-number=ec-2.7.4.6}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=nucleoside-diphosphate kinase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|ecoli|plantarum|genome}}
 

Revision as of 18:11, 26 April 2021

Gene FSU_RS00455

  • transcription-direction:
    • positive
  • centisome-position:
    • 2.7036662
  • left-end-position:
    • 103902
  • right-end-position:
    • 105659

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7980
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS11085&oldid=78456"