Difference between revisions of "FSU RS13255"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:gene == Gene FSU_RS02800 == * transcription-direction: ** positive * centisome-position: ** 17.046013 * left-end-position: ** 655079 * right-end-position: **...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DTDPKIN-RXN ==
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== Gene FSU_RS02800 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 17.046013   
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* common-name:
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* left-end-position:
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** nucleoside-diphosphate kinase
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** 655079
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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** 657352
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS12530]]
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* [[fibrobacter_23042021]]
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== Reaction(s) associated ==
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* [[ACONITATEDEHYDR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15240]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FSU_RS14500]]
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[ACONITATEHYDR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-14047]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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== Pathway(s) ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
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* [[PWY66-398]]
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** '''11''' reactions found over '''13''' reactions in the full pathway
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** '''7''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
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* [[PWY-5913]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
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* [[REDCITCYC]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
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* [[PWY-6969]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** '''9''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* [[P105-PWY]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* [[FERMENTATION-PWY]]
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** '''14''' reactions found over '''16''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[GLYOXYLATE-BYPASS]]
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== External links  ==
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* RHEA:
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* [[PWY-6549]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-6728]]
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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{{#set: ec-number=ec-2.7.4.6}}
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* [[P23-PWY]]
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{{#set: direction=left-to-right}}
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** '''11''' reactions found over '''12''' reactions in the full pathway
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{{#set: common-name=nucleoside-diphosphate kinase}}
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* [[PWY-7124]]
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{{#set: nb gene associated=3}}
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: nb pathway associated=7}}
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* [[PWY-5392]]
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{{#set: reconstruction category=annotation|orthology}}
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** '''8''' reactions found over '''12''' reactions in the full pathway
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
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* [[TCA]]
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{{#set: reconstruction comment=n.a}}
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** '''10''' reactions found over '''10''' reactions in the full pathway
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{{#set: reconstruction source=bthetaiotaomicron|ecoli|plantarum|genome}}
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* [[PWY-7254]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5690]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
 +
{{#set: centisome-position=17.046013    }}
 +
{{#set: left-end-position=655079}}
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{{#set: right-end-position=657352}}
 +
{{#set: organism associated=fibrobacter_23042021}}
 +
{{#set: nb reaction associated=3}}
 +
{{#set: nb pathway associated=15}}

Revision as of 18:11, 26 April 2021

Gene FSU_RS02800

  • transcription-direction:
    • positive
  • centisome-position:
    • 17.046013
  • left-end-position:
    • 655079
  • right-end-position:
    • 657352

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13255&oldid=78478"