Difference between revisions of "FISUC RS08250"

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(Created page with "Category:reaction == Reaction GLUTSEMIALDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41] * direction: ** left-to-right * common-name: **...")
(Created page with "Category:gene == Gene FISUC_RS08250 == * common-name: ** pyrf * transcription-direction: ** positive * centisome-position: ** 52.684265 * left-end-position: ** 2024464...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GLUTSEMIALDEHYDROG-RXN ==
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== Gene FISUC_RS08250 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** glutamate-5-semialdehyde dehydrogenase
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** pyrf
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== Reaction formula ==
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* transcription-direction:
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* 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS01505]]
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** 52.684265   
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* left-end-position:
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** 2024464
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* right-end-position:
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** 2025351
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== Organism(s) associated with this gene  ==
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* [[fibrobacter_23042021]]
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== Reaction(s) associated ==
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* [[OROTPDECARB-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7791]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-5686]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7790]]
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* Gene: [[FISUC_RS15310]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** Category: [[annotation]]
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{{#set: common-name=pyrf}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: transcription-direction=positive}}
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== Pathway(s) ==
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{{#set: centisome-position=52.684265    }}
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
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{{#set: left-end-position=2024464}}
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: right-end-position=2025351}}
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* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
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{{#set: organism associated=fibrobacter_23042021}}
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** '''4''' reactions found over '''4''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis:
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{{#set: nb pathway associated=3}}
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-3341]], L-proline biosynthesis III:
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PROSYN-PWY]], L-proline biosynthesis I:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19543 19543]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
 
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** [http://www.uniprot.org/uniprot/P45121 P45121]
 
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** [http://www.uniprot.org/uniprot/P53000 P53000]
 
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** [http://www.uniprot.org/uniprot/P07004 P07004]
 
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** [http://www.uniprot.org/uniprot/P17857 P17857]
 
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** [http://www.uniprot.org/uniprot/P45638 P45638]
 
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** [http://www.uniprot.org/uniprot/P54885 P54885]
 
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** [http://www.uniprot.org/uniprot/O04226 O04226]
 
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{{#set: ec-number=ec-1.2.1.41}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=glutamate-5-semialdehyde dehydrogenase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
 

Revision as of 18:11, 26 April 2021

Gene FISUC_RS08250

  • common-name:
    • pyrf
  • transcription-direction:
    • positive
  • centisome-position:
    • 52.684265
  • left-end-position:
    • 2024464
  • right-end-position:
    • 2025351

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 6 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS08250&oldid=78496"