Difference between revisions of "2-HALOACID-DEHALOGENASE-RXN"

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(Created page with "Category:reaction == Reaction RXN0-884 == * ec-number: ** [http://enzyme.expasy.org/EC/1.17.7.4 ec-1.17.7.4] * direction: ** left-to-right * common-name: ** 4-hydroxy-3-me...")
(Created page with "Category:reaction == Reaction ACETATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15] ** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1] * di...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-884 ==
+
== Reaction ACETATEKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.7.4 ec-1.17.7.4]
+
** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15]
 +
** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
+
** acetate kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-4211]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ACETYL-P]][c] '''+''' 1 [[ADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS11675]]
+
* Gene: [[FSU_RS04650]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS09410]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS09730]]
+
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS07485]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
+
** '''9''' reactions found over '''7''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY0-1477]], ethanolamine utilization:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''8''' reactions found over '''24''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 +
** '''3''' reactions found over '''17''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
* [[METH-ACETATE-PWY]], methanogenesis from acetate:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[P161-PWY]], acetylene degradation (anaerobic):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''13''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY0-1312]], acetate and ATP formation from acetyl-CoA I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-8015]], glycine degradation (Stickland reaction):
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5482]], pyruvate fermentation to acetate II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[P3-PWY]], gallate degradation III (anaerobic):
 +
** '''2''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5485]], pyruvate fermentation to acetate IV:
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24827 24827]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11355 11355]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R08210 R08210]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00315 R00315]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07219 R07219]
+
* UNIPROT:
−
{{#set: ec-number=ec-1.17.7.4}}
+
** [http://www.uniprot.org/uniprot/Q9JTM0 Q9JTM0]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P38502 P38502]
−
{{#set: common-name=4-hydroxy-3-methylbut-2-enyl diphosphate reductase}}
+
** [http://www.uniprot.org/uniprot/P37877 P37877]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9PPL8 Q9PPL8]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9CE36 Q9CE36]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P47599 P47599]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9CE35 Q9CE35]
 +
** [http://www.uniprot.org/uniprot/Q9JT07 Q9JT07]
 +
** [http://www.uniprot.org/uniprot/P44406 P44406]
 +
** [http://www.uniprot.org/uniprot/P0A6A3 P0A6A3]
 +
** [http://www.uniprot.org/uniprot/P73162 P73162]
 +
{{#set: ec-number=ec-2.7.2.1|ec-2.7.2.15}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=acetate kinase}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=14}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=ecoli|bifidobacterium|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Revision as of 17:07, 14 October 2022

Reaction ACETATEKIN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii):
    • 9 reactions found over 7 reactions in the full pathway
  • PWY0-1477, ethanolamine utilization:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 8 reactions found over 24 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 3 reactions found over 17 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 14 reactions found over 16 reactions in the full pathway
  • METH-ACETATE-PWY, methanogenesis from acetate:
    • 2 reactions found over 6 reactions in the full pathway
  • P161-PWY, acetylene degradation (anaerobic):
    • 4 reactions found over 5 reactions in the full pathway
  • P163-PWY, L-lysine fermentation to acetate and butanoate:
    • 3 reactions found over 10 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 13 reactions found over 15 reactions in the full pathway
  • PWY0-1312, acetate and ATP formation from acetyl-CoA I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-8015, glycine degradation (Stickland reaction):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5482, pyruvate fermentation to acetate II:
    • 3 reactions found over 3 reactions in the full pathway
  • P3-PWY, gallate degradation III (anaerobic):
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-5485, pyruvate fermentation to acetate IV:
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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