Difference between revisions of "2.7.7.39-RXN"

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(Created page with "Category:reaction == Reaction 2.7.7.39-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.39 ec-2.7.7.39] * direction: ** left-to-right * common-name: ** glycerol-3...")
(Created page with "Category:reaction == Reaction RXN-8991 == * common-name: ** 3-isopropylmalate dehydratase * direction: ** reversible * synonymous: ** (2r,3s)-3-isopropylmalate hydro-lyase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.7.7.39-RXN ==
+
== Reaction RXN-8991 ==
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/2.7.7.39 ec-2.7.7.39]
+
** 3-isopropylmalate dehydratase
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
+
* synonymous:
−
** glycerol-3-phosphate cytidylyltransferase
+
** (2r,3s)-3-isopropylmalate hydro-lyase
 +
** β-isopropylmalate dehydratase
 +
** 3-isopropylmalate hydro-lyase
 +
** α-isopropylmalate isomerase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CTP]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-606]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06730]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FISUC_RS00340]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS00345]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS02210]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS04840]]
+
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02215]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TEICHOICACID-PWY]], poly(glycerol phosphate) wall teichoic acid biosynthesis:
+
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
−
** '''4''' reactions found over '''12''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7815]], poly(ribitol phosphate) wall teichoic acid biosynthesis I (B. subtilis):
+
* [[LEUSYN-PWY]], L-leucine biosynthesis:
−
** '''4''' reactions found over '''15''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7819]], poly(3-O-&beta;-D-glucopyranosyl-N-acetylgalactosamine 1-phosphate) wall teichoic acid biosynthesis:
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7816]], poly(ribitol phosphate) wall teichoic acid biosynthesis II (S. aureus):
 
−
** '''4''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13362 13362]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00856 R00856]
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
−
* UNIPROT:
+
{{#set: common-name=3-isopropylmalate dehydratase}}
−
** [http://www.uniprot.org/uniprot/P27623 P27623]
+
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-2.7.7.39}}
+
{{#set: synonymous=3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|(2r,3s)-3-isopropylmalate hydro-lyase|&alpha;-isopropylmalate isomerase}}
−
{{#set: direction=left-to-right}}
+
{{#set: nb gene associated=4}}
−
{{#set: common-name=glycerol-3-phosphate cytidylyltransferase}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=4}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=plantarum|genome}}
+
{{#set: reconstruction source=ecoli|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Revision as of 17:09, 14 October 2022

Reaction RXN-8991

  • common-name:
    • 3-isopropylmalate dehydratase
  • direction:
    • reversible
  • synonymous:
    • (2r,3s)-3-isopropylmalate hydro-lyase
    • β-isopropylmalate dehydratase
    • 3-isopropylmalate hydro-lyase
    • α-isopropylmalate isomerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 6 reactions found over 7 reactions in the full pathway
  • LEUSYN-PWY, L-leucine biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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