Difference between revisions of "RXN0-382"

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(Created page with "Category:reaction == Reaction RXN-12587 == * direction: ** reversible * common-name: ** cysteine desulfurase == Reaction formula == * 1 L-Cysteine-Desulfurase-persulfide...")
(Created page with "Category:reaction == Reaction UDP-NACMURALGLDAPAALIG-RXN == * common-name: ** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase ** udp-n-acetylmuram...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12587 ==
+
== Reaction UDP-NACMURALGLDAPAALIG-RXN ==
 +
* common-name:
 +
** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase
 +
** udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.2.10 ec-6.3.2.10]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** cysteine desulfurase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-Cysteine-Desulfurase-persulfide]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''<=>''' 1 [[Cysteine-Desulfurase-L-cysteine]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[UDP-AAGM-DIAMINOHEPTANEDIOATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[C1]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS02220]]
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* Gene: [[FSU_RS01110]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS02815]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS07165]]
+
* Gene: [[FSU_RS04705]]
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS04105]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FISUC_RS05270]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28375 28375]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R11529 R11529]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04617 R04617]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43891 43891]
+
** [http://www.uniprot.org/uniprot/Q9PPC5 Q9PPC5]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P11880 P11880]
−
{{#set: common-name=cysteine desulfurase}}
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** [http://www.uniprot.org/uniprot/Q9CIL4 Q9CIL4]
−
{{#set: nb gene associated=4}}
+
** [http://www.uniprot.org/uniprot/Q9JSZ1 Q9JSZ1]
−
{{#set: nb pathway associated=0}}
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** [http://www.uniprot.org/uniprot/P45061 P45061]
−
{{#set: reconstruction category=annotation}}
+
{{#set: common-name=udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase|udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: ec-number=ec-6.3.2.10}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=ecoli|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Revision as of 07:49, 17 October 2022

Reaction UDP-NACMURALGLDAPAALIG-RXN

  • common-name:
    • udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase
    • udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7953, UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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