Difference between revisions of "DADPKIN-RXN"

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(Created page with "Category:reaction == Reaction ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.44 ec-2.6.1.44] * direction: ** reversible ==...")
(Created page with "Category:reaction == Reaction LINOLENOYL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN ==
+
== Reaction LINOLENOYL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.44 ec-2.6.1.44]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** long-chain fatty acid--coa ligase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLYOX]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[LINOLENIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[LINOLENOYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS14015]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS12045]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYSYN-ALA-PWY]], glycine biosynthesis III:
+
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7049]], icosapentaenoate biosynthesis II (6-desaturase, mammals):
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: ec-number=ec-6.2.1.3}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24248 24248]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=long-chain fatty acid--coa ligase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00369 R00369]
+
{{#set: nb gene associated=2}}
−
* UNIPROT:
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P31029 P31029]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P31030 P31030]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P41689 P41689]
+
{{#set: reconstruction comment=n.a}}
−
** [http://www.uniprot.org/uniprot/Q94055 Q94055]
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
−
** [http://www.uniprot.org/uniprot/Q56YA5 Q56YA5]
 
−
** [http://www.uniprot.org/uniprot/P21549 P21549]
 
−
{{#set: ec-number=ec-2.6.1.44}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=gap-filling}}
 
−
{{#set: reconstruction tool=meneco}}
 
−
{{#set: reconstruction comment=added for gapfilling}}
 
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
 

Revision as of 07:50, 17 October 2022

Reaction LINOLENOYL-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid--coa ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals):
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7049, icosapentaenoate biosynthesis II (6-desaturase, mammals):
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=DADPKIN-RXN&oldid=86756"