Difference between revisions of "CPD-18808"

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(Created page with "Category:gene == Gene FSU_RS02795 == * common-name: ** trpa * transcription-direction: ** positive * centisome-position: ** 17.017963 * left-end-position: ** 654001 *...")
(Created page with "Category:metabolite == Metabolite CPD-18808 == * common-name: ** a nascent peptidoglycan (meso-dap containing) with glcnac terminus * inchi-key: ** zjucbljpwmjppp-zbzlbufy...")
 
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[[Category:gene]]
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[[Category:metabolite]]
== Gene FSU_RS02795 ==
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== Metabolite CPD-18808 ==
 
* common-name:
 
* common-name:
** trpa
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** a nascent peptidoglycan (meso-dap containing) with glcnac terminus
* transcription-direction:
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* inchi-key:
** positive
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** zjucbljpwmjppp-zbzlbufysa-j
* centisome-position:
+
* molecular-weight:
** 17.017963   
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** 1845.151
* left-end-position:
+
* smiles:
** 654001
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** cc(c)=cccc(/c)=c/ccc(/c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/cop(=o)([o-])op(=o)([o-])oc2([c@h](nc(=o)c)[c@@h](o[c@h](c)c(=o)n[c@@h](c)c(=o)n[c@@h](c(=o)[o-])ccc(=o)n[c@@h](ccc[c@@h]([n+])c(=o)[o-])c(n[c@h](c)c([o-])=o)=o)[c@h](o[c@h]1(o[c@h](co)[c@@h](o)[c@h](o)[c@@h](nc(=o)c)1))[c@@h](co)o2)
* right-end-position:
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== Reaction(s) known to consume the compound ==
** 654753
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== Reaction(s) known to produce the compound ==
== Organism(s) associated with this gene  ==
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* [[RXN-17393]]
* [[fibrobacter_07102020]]
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== Reaction(s) of unknown directionality ==
== Reaction(s) associated ==
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{{#set: common-name=a nascent peptidoglycan (meso-dap containing) with glcnac terminus}}
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: inchi-key=inchikey=zjucbljpwmjppp-zbzlbufysa-j}}
* [[RXN0-2381]]
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{{#set: molecular-weight=1845.151}}
** Category: [[annotation]]
 
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* [[RXN0-2382]]
 
** Category: [[annotation]]
 
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* [[TRYPSYN-RXN]]
 
** Category: [[annotation]]
 
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
</div>
 
== Pathway(s) associated ==
 
* [[PWY-6949]]
 
** '''1''' reactions found over '''6''' reactions in the full pathway
 
* [[TRPSYN-PWY]]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
{{#set: common-name=trpa}}
 
{{#set: transcription-direction=positive}}
 
{{#set: centisome-position=17.017963    }}
 
{{#set: left-end-position=654001}}
 
{{#set: right-end-position=654753}}
 
{{#set: organism associated=fibrobacter_07102020}}
 
{{#set: nb reaction associated=3}}
 
{{#set: nb pathway associated=2}}
 

Latest revision as of 11:14, 17 October 2022

Metabolite CPD-18808

  • common-name:
    • a nascent peptidoglycan (meso-dap containing) with glcnac terminus
  • inchi-key:
    • zjucbljpwmjppp-zbzlbufysa-j
  • molecular-weight:
    • 1845.151
  • smiles:
    • cc(c)=cccc(/c)=c/ccc(/c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/cop(=o)([o-])op(=o)([o-])oc2([c@h](nc(=o)c)[c@@h](o[c@h](c)c(=o)n[c@@h](c)c(=o)n[c@@h](c(=o)[o-])ccc(=o)n[c@@h](ccc[c@@h]([n+])c(=o)[o-])c(n[c@h](c)c([o-])=o)=o)[c@h](o[c@h]1(o[c@h](co)[c@@h](o)[c@h](o)[c@@h](nc(=o)c)1))[c@@h](co)o2)

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality