Difference between revisions of "2-OXOGLUTARATE-SYNTHASE-RXN"

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(Created page with "Category:reaction == Reaction RXN0-2023 == * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.13 ec-2.8.1.13] * direction: ** left-to-right * common-name: ** trna 2-thiour...")
(Created page with "Category:reaction == Reaction 2-OXOGLUTARATE-SYNTHASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.7.3 ec-1.2.7.3] * direction: ** reversible == Reaction formul...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2023 ==
+
== Reaction 2-OXOGLUTARATE-SYNTHASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.8.1.13 ec-2.8.1.13]
+
** [http://enzyme.expasy.org/EC/1.2.7.3 ec-1.2.7.3]
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
−
* common-name:
 
−
** trna 2-thiouridine(34) synthase mnma
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[TusE-S-sulfanylcysteine]][c] '''+''' 1 [[tRNA-uridine34]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TusE-L-cysteine]][c] '''+''' 1 [[tRNA-2-thiouridine34]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06220]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS05355]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS04330]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS07250]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7892]], tRNA-uridine 2-thiolation (bacteria):
+
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.8.1.13}}
+
* RHEA:
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{{#set: direction=left-to-right}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17300 17300]
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{{#set: common-name=trna 2-thiouridine(34) synthase mnma}}
+
* LIGAND-RXN:
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{{#set: nb gene associated=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01197 R01197]
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{{#set: nb pathway associated=1}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/O27113 O27113]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/Q9PHX7 Q9PHX7]
−
{{#set: reconstruction comment=n.a}}
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** [http://www.uniprot.org/uniprot/O27114 O27114]
−
{{#set: reconstruction source=genome}}
+
** [http://www.uniprot.org/uniprot/Q9PHX6 Q9PHX6]
 +
** [http://www.uniprot.org/uniprot/O29782 O29782]
 +
** [http://www.uniprot.org/uniprot/O25313 O25313]
 +
** [http://www.uniprot.org/uniprot/O29779 O29779]
 +
** [http://www.uniprot.org/uniprot/Q9PHX9 Q9PHX9]
 +
** [http://www.uniprot.org/uniprot/Q57956 Q57956]
 +
{{#set: ec-number=ec-1.2.7.3}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=gap-filling}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}
 +
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}

Latest revision as of 11:15, 17 October 2022

Reaction 2-OXOGLUTARATE-SYNTHASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • REDCITCYC, TCA cycle VIII (Helicobacter):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 9 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 8 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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