Difference between revisions of "RXN0-382"

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(Created page with "Category:reaction == Reaction UDP-NACMURALGLDAPAALIG-RXN == * common-name: ** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase ** udp-n-acetylmuram...")
(Created page with "Category:reaction == Reaction RXN0-382 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1 ec-2.7.1] * direction: ** left-to-right == Reaction formula == * 1 ATP[c]...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction UDP-NACMURALGLDAPAALIG-RXN ==
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== Reaction RXN0-382 ==
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* common-name:
 
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** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase
 
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** udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/6.3.2.10 ec-6.3.2.10]
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** [http://enzyme.expasy.org/EC/2.7.1 ec-2.7.1]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ATP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[UDP-AAGM-DIAMINOHEPTANEDIOATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[C1]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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* 1 [[ATP]][c] '''+''' 1 [[CPD-1093]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS01110]]
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* Gene: [[FSU_RS03375]]
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS02815]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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* Gene: [[FSU_RS04705]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28375 28375]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27991 27991]
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* LIGAND-RXN:
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{{#set: ec-number=ec-2.7.1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04617 R04617]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9PPC5 Q9PPC5]
 
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** [http://www.uniprot.org/uniprot/P11880 P11880]
 
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** [http://www.uniprot.org/uniprot/Q9CIL4 Q9CIL4]
 
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** [http://www.uniprot.org/uniprot/Q9JSZ1 Q9JSZ1]
 
−
** [http://www.uniprot.org/uniprot/P45061 P45061]
 
−
{{#set: common-name=udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelate ligase|udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase}}
 
−
{{#set: ec-number=ec-6.3.2.10}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: nb gene associated=3}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=2}}
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{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=bifidobacterium|ecoli}}

Latest revision as of 11:15, 17 October 2022

Reaction RXN0-382

  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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