Difference between revisions of "DADPKIN-RXN"

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(Created page with "Category:metabolite == Metabolite METHYLENETETRAHYDROMETHANOPTERIN == * common-name: ** 5,10-methylene-tetrahydromethanopterin * inchi-key: ** gbmigewjapfsqi-cafbyhecsa-k...")
(Created page with "Category:reaction == Reaction DADPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
 
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[[Category:metabolite]]
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[[Category:reaction]]
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== Metabolite METHYLENETETRAHYDROMETHANOPTERIN ==
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== Reaction DADPKIN-RXN ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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* direction:
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** left-to-right
 
* common-name:
 
* common-name:
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** 5,10-methylene-tetrahydromethanopterin
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** nucleoside-diphosphate kinase
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* inchi-key:
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== Reaction formula ==
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** gbmigewjapfsqi-cafbyhecsa-k
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* 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 785.677
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* Gene: [[FSU_RS15240]]
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* smiles:
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** Category: [[orthology]]
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** c[c@@h]4([c@h]3([c@@h](c)n(c2(/c=cc(\c[c@h](o)[c@h](o)[c@h](o)co[c@h]1([c@h](o)[c@@h]([c@@h](cop([o-])(=o)o[c@h](c(=o)[o-])ccc(=o)[o-])o1)o))=c/c=2))cn3c5(/c(=o)nc(n)=nc(/n4)=5)))
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) known to consume the compound ==
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* Gene: [[FSU_RS14500]]
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* [[RXN-15635]]
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=5,10-methylene-tetrahydromethanopterin}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: inchi-key=inchikey=gbmigewjapfsqi-cafbyhecsa-k}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: molecular-weight=785.677}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* Gene: [[FISUC_RS12530]]
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** Category: [[annotation]]
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s) ==
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* [[PWY-7224]], purine deoxyribonucleosides salvage:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27675 27675]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
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{{#set: ec-number=ec-2.7.4.6}}
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{{#set: direction=left-to-right}}
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{{#set: common-name=nucleoside-diphosphate kinase}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=ecoli|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:15, 17 October 2022

Reaction DADPKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphate kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7224, purine deoxyribonucleosides salvage:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=DADPKIN-RXN&oldid=92172"