Difference between revisions of "DADPKIN-RXN"

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(Created page with "Category:reaction == Reaction 3.4.24.56-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.24.56 ec-3.4.24.56] * direction: ** left-to-right == Reaction formula == *...")
(Created page with "Category:reaction == Reaction DADPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.24.56-RXN ==
+
== Reaction DADPKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.24.56 ec-3.4.24.56]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** nucleoside-diphosphate kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Insulysin-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 2 [[Peptides-holder]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06920]]
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* Gene: [[FSU_RS15240]]
−
** Category: [[manual]]
+
** Category: [[orthology]]
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS05515]]
+
* Gene: [[FSU_RS14500]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS05860]]
+
** Category: [[orthology]]
−
** Category: [[manual]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS12530]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7224]], purine deoxyribonucleosides salvage:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P35559 P35559]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27675 27675]
−
** [http://www.uniprot.org/uniprot/P22817 P22817]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P14735 P14735]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
−
{{#set: ec-number=ec-3.4.24.56}}
+
{{#set: ec-number=ec-2.7.4.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 +
{{#set: common-name=nucleoside-diphosphate kinase}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: reconstruction comment=added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=reactions_add_147_emile_annot}}
+
{{#set: reconstruction source=ecoli|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:15, 17 October 2022

Reaction DADPKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphate kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7224, purine deoxyribonucleosides salvage:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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