Difference between revisions of "DADPKIN-RXN"

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(Created page with "Category:reaction == Reaction ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.44 ec-2.6.1.44] * direction: ** reversible ==...")
(Created page with "Category:reaction == Reaction DADPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN ==
+
== Reaction DADPKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.44 ec-2.6.1.44]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** nucleoside-diphosphate kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLYOX]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS15240]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS14500]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS12530]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYSYN-ALA-PWY]], glycine biosynthesis III:
+
* [[PWY-7224]], purine deoxyribonucleosides salvage:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24248 24248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27675 27675]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00369 R00369]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
−
* UNIPROT:
+
{{#set: ec-number=ec-2.7.4.6}}
−
** [http://www.uniprot.org/uniprot/P31029 P31029]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P31030 P31030]
+
{{#set: common-name=nucleoside-diphosphate kinase}}
−
** [http://www.uniprot.org/uniprot/P41689 P41689]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/Q94055 Q94055]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q56YA5 Q56YA5]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P21549 P21549]
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
−
{{#set: ec-number=ec-2.6.1.44}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: direction=reversible}}
+
{{#set: reconstruction source=ecoli|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=gap-filling}}
 
−
{{#set: reconstruction tool=meneco}}
 
−
{{#set: reconstruction comment=added for gapfilling}}
 
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
 

Latest revision as of 11:15, 17 October 2022

Reaction DADPKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphate kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7224, purine deoxyribonucleosides salvage:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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