Difference between revisions of "RXN-16621"

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(Created page with "Category:reaction == Reaction ACETOLACTSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6] * direction: ** left-to-right * common-name: ** acetolac...")
(Created page with "Category:reaction == Reaction RXN-16621 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] * dir...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETOLACTSYN-RXN ==
+
== Reaction RXN-16621 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acetolactate synthase large subunit
+
** beta-ketoacyl-acp synthase ii
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 2 [[PYRUVATE]][c] '''=>''' 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[5Z-tetradec-5-enoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[7Z-3-oxo-hexadec-7-enoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FISUC_RS15410]]
−
* Gene: [[FSU_RS00425]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FISUC_RS15210]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[FSU_RS15610]]
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01400]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FSU_RS01605]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS15615]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS13635]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS13640]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS14235]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
+
* [[PWY-7664]], oleate biosynthesis IV (anaerobic):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-5939]], pyruvate fermentation to (R)-acetoin II:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6389]], pyruvate fermentation to (S)-acetoin:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5938]], pyruvate fermentation to (R)-acetoin I:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[VALSYN-PWY]], L-valine biosynthesis:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20504 20504]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25249 25249]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00226 R00226]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q59950 Q59950]
 
−
** [http://www.uniprot.org/uniprot/P42463 P42463]
 
−
** [http://www.uniprot.org/uniprot/Q8XAV3 Q8XAV3]
 
−
** [http://www.uniprot.org/uniprot/P27868 P27868]
 
−
** [http://www.uniprot.org/uniprot/P45260 P45260]
 
−
** [http://www.uniprot.org/uniprot/Q57625 Q57625]
 
−
** [http://www.uniprot.org/uniprot/P37251 P37251]
 
−
** [http://www.uniprot.org/uniprot/P45261 P45261]
 
−
** [http://www.uniprot.org/uniprot/O27493 O27493]
 
−
** [http://www.uniprot.org/uniprot/O66759 O66759]
 
−
** [http://www.uniprot.org/uniprot/Q9PHU2 Q9PHU2]
 
−
** [http://www.uniprot.org/uniprot/O05031 O05031]
 
−
** [http://www.uniprot.org/uniprot/Q57725 Q57725]
 
−
** [http://www.uniprot.org/uniprot/Q9PHU1 Q9PHU1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI1 Q9JTI1]
 
−
** [http://www.uniprot.org/uniprot/Q58077 Q58077]
 
−
** [http://www.uniprot.org/uniprot/O28554 O28554]
 
−
** [http://www.uniprot.org/uniprot/O53554 O53554]
 
−
** [http://www.uniprot.org/uniprot/Q04789 Q04789]
 
−
** [http://www.uniprot.org/uniprot/Q9JRF4 Q9JRF4]
 
−
** [http://www.uniprot.org/uniprot/Q59272 Q59272]
 
−
** [http://www.uniprot.org/uniprot/P27696 P27696]
 
−
** [http://www.uniprot.org/uniprot/Q59498 Q59498]
 
−
** [http://www.uniprot.org/uniprot/Q9RFQ7 Q9RFQ7]
 
−
** [http://www.uniprot.org/uniprot/Q05767 Q05767]
 
−
** [http://www.uniprot.org/uniprot/P40811 P40811]
 
−
** [http://www.uniprot.org/uniprot/P21622 P21622]
 
−
** [http://www.uniprot.org/uniprot/P27818 P27818]
 
−
** [http://www.uniprot.org/uniprot/Q41768 Q41768]
 
−
** [http://www.uniprot.org/uniprot/Q41769 Q41769]
 
−
** [http://www.uniprot.org/uniprot/P69684 P69684]
 
−
** [http://www.uniprot.org/uniprot/P27819 P27819]
 
−
** [http://www.uniprot.org/uniprot/Q9R586 Q9R586]
 
−
** [http://www.uniprot.org/uniprot/Q02137 Q02137]
 
−
** [http://www.uniprot.org/uniprot/Q02140 Q02140]
 
−
** [http://www.uniprot.org/uniprot/P36620 P36620]
 
−
** [http://www.uniprot.org/uniprot/Q42767 Q42767]
 
−
** [http://www.uniprot.org/uniprot/Q42768 Q42768]
 
−
** [http://www.uniprot.org/uniprot/Q49865 Q49865]
 
−
** [http://www.uniprot.org/uniprot/O22547 O22547]
 
−
** [http://www.uniprot.org/uniprot/O49229 O49229]
 
−
** [http://www.uniprot.org/uniprot/O22578 O22578]
 
−
** [http://www.uniprot.org/uniprot/O49210 O49210]
 
−
** [http://www.uniprot.org/uniprot/Q60021 Q60021]
 
−
** [http://www.uniprot.org/uniprot/P07342 P07342]
 
−
** [http://www.uniprot.org/uniprot/P00892 P00892]
 
−
** [http://www.uniprot.org/uniprot/P08142 P08142]
 
−
** [http://www.uniprot.org/uniprot/P0ADF8 P0ADF8]
 
−
** [http://www.uniprot.org/uniprot/P00894 P00894]
 
−
** [http://www.uniprot.org/uniprot/P00893 P00893]
 
−
** [http://www.uniprot.org/uniprot/P17597 P17597]
 
−
** [http://www.uniprot.org/uniprot/P09342 P09342]
 
−
** [http://www.uniprot.org/uniprot/P09114 P09114]
 
−
** [http://www.uniprot.org/uniprot/P14874 P14874]
 
−
</div>
 
−
{{#set: ec-number=ec-2.2.1.6}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acetolactate synthase large subunit}}
+
{{#set: common-name=beta-ketoacyl-acp synthase ii}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|bifidobacterium|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:15, 17 October 2022

Reaction RXN-16621

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7664, oleate biosynthesis IV (anaerobic):
    • 10 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-16621&oldid=92224"