Difference between revisions of "RXN-16380"

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(Created page with "Category:reaction == Reaction 4.2.1.58-RXN == * common-name: ** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase ** 3-hydroxyacyl-acp dehydratase fabz * ec-number:...")
(Created page with "Category:reaction == Reaction RXN-16380 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 4.2.1.58-RXN ==
+
== Reaction RXN-16380 ==
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* common-name:
 
−
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
 
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** 3-hydroxyacyl-acp dehydratase fabz
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
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** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
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* synonymous:
+
* common-name:
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** β-hydroxybutyryl acyl carrier protein (acp) dehydrase
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** long-chain fatty acid--coa ligase
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** β-hydroxybutyryl acyl carrier  protein dehydrase
 
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** crotonoyl-[acyl-carrier-protein] hydratase
 
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** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 
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** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 
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** β-hydroxybutyryl acyl carrier protein dehydrase
 
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** enoyl acyl carrier protein hydrase
 
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** crotonyl acyl carrier protein hydratase
 
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** 3-hydroxybutyryl acyl carrier protein dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[Crotonyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FISUC_RS14115]]
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* Gene: [[FISUC_RS12045]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* Gene: [[FSU_RS00310]]
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* Gene: [[FSU_RS14015]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
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** '''22''' reactions found over '''31''' reactions in the full pathway
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
 
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** '''20''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: ec-number=ec-6.2.1.3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
 
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{{#set: common-name=(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase|3-hydroxyacyl-acp dehydratase fabz}}
 
−
{{#set: ec-number=ec-2.3.1.86|ec-4.2.1.59|ec-2.3.1.85}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: synonymous=β-hydroxybutyryl acyl carrier  protein dehydrase|crotonoyl-[acyl-carrier-protein] hydratase|crotonyl acyl carrier protein hydratase|β-hydroxybutyryl acyl carrier protein (acp) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|3-hydroxybutyryl acyl carrier protein dehydratase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
+
{{#set: common-name=long-chain fatty acid--coa ligase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
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{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
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{{#set: reconstruction source=fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1|bthetaiotaomicron}}

Latest revision as of 11:16, 17 October 2022

Reaction RXN-16380

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • long-chain fatty acid--coa ligase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-16380&oldid=92285"